Evidence map›Paper›PMID 33566096›Full record

ArticleGenome biology and evolution2021

Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction.

Varsha Mathur, Waldan K Kwong, Filip Husnik, Nicholas A T Irwin, Árni Kristmundsson, Camino Gestal, Mark Freeman, Patrick J Keeling

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

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  8. Morphological and molecular phylogenetic characterization ofInternational journal for parasitology. Parasites and wildlife · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 5 countries.

Varsha MathurDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Waldan K KwongDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Filip HusnikOkinawa Institute of Science and Technology, Okinawa, Japan.
Nicholas A T IrwinDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Árni KristmundssonFish Disease Laboratory, Institute for Experimental Pathology, University of Iceland, Reykjavík, Iceland.
Camino GestalInstitute of Marine Research (IIM-CSIC), Vigo, Spain.
Mark FreemanRoss University School of Veterinary Medicine, Basseterre, Saint Kitts and Nevis, West Indies.
Patrick J KeelingDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
University of British Columbia · CAInstituto de Investigacións Mariñas · ESOkinawa Institute of Science and Technology Graduate University · JPRoss University School of Veterinary Medicine · KNUniversity of Iceland · IS

Funding

CIHR MOP-42517
6 · The paper itself

Abstract

The phylum Apicomplexa consists largely of obligate animal parasites that include the causative agents of human diseases such as malaria. Apicomplexans have also emerged as models to study the evolution of nonphotosynthetic plastids, as they contain a relict chloroplast known as the apicoplast. The apicoplast offers important clues into how apicomplexan parasites evolved from free-living ancestors and can provide insights into reductive organelle evolution. Here, we sequenced the transcriptomes and apicoplast genomes of three deep-branching apicomplexans, Margolisiella islandica, Aggregata octopiana, and Merocystis kathae. Phylogenomic analyses show that these taxa, together with Rhytidocystis, form a new lineage of apicomplexans that is sister to the Coccidia and Hematozoa (the lineages including most medically significant taxa). Members of this clade retain plastid genomes and the canonical apicomplexan plastid metabolism. However, the apicoplast genomes of Margolisiella and Rhytidocystis are the most reduced of any apicoplast, are extremely GC-poor, and have even lost genes for the canonical plastidial RNA polymerase. This new lineage of apicomplexans, for which we propose the class Marosporida class nov., occupies a key intermediate position in the apicomplexan phylogeny, and adds a new complexity to the models of stepwise reductive evolution of genome structure and organelle function in these parasites.

Indexed as

Genome SizeAnimalsApicomplexaApicoplastsBiosynthetic PathwaysCoccidiaDNA-Directed RNA PolymerasesEimeriidaeEvolution, MolecularInvertebratesPhylogenyProtozoan ProteinsTranscription, GeneticDNA-Directed RNA PolymerasesProtozoan Proteinsapicomplexansorganelle evolutionphylogenomicsplastids

Identifiers

PMID33566096
PMCPMC7875001
OpenAlexW3104316056

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.