Evidence map›Paper›PMID 33564056›Full record

ArticleScientific reports2021

Describing variability in pig genes involved in coronavirus infections for a One Health perspective in conservation of animal genetic resources.

Samuele Bovo, Giuseppina Schiavo, Anisa Ribani, Valerio J Utzeri, Valeria Taurisano, Mohamad Ballan, Maria Muñoz, Estefania Alves, Jose P Araujo, Riccardo Bozzi and 22 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Investigation ofAnimals : an open access journal from MDPI · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 18 institutions in 10 countries.

Samuele BovoDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Giuseppina SchiavoDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Anisa RibaniDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Valerio J UtzeriDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Valeria TaurisanoDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Mohamad BallanDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy.
Maria MuñozDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Estefania AlvesDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Jose P AraujoCentro de Investigação de Montanha (CIMO), Instituto Politécnico de Viana do Castelo, Escola Superior Agrária, Refóios do Lima, 4990-706, Ponte de Lima, Portugal.
Riccardo BozziDAGRI - Animal Science Section, University of Florence, Via delle Cascine 5, 50144, Florence, Italy.
Rui CharnecaMED - Mediterranean Institute for Agriculture, Environment and Development, Universidade de Évora, Pólo da Mitra, Apartado 94, 7006-554, Évora, Portugal.
Federica Di PalmaBiodiversity School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk, NR47UH, UK.
Ivona Djurkin KušecFaculty of Agrobiotechnical Sciences Osijek, Josip Juraj Strossmayer University of Osijek, Vladimira Preloga 1, 31000, Osijek, Croatia.
Graham EtheringtonEarlham Institute, Norwich Research Park, Colney Lane, Norwich, Norfolk, NR47UZ, UK.
Ana I FernandezDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Fabián GarcíaDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Juan García-CascoDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Danijel KarolyiDepartment of Animal Science, Faculty of Agriculture, University of Zagreb, Svetošimunska c. 25, 10000, Zagreb, Croatia.
Maurizio GalloAssociazione Nazionale Allevatori Suini (ANAS), Via Nizza 53, 00198, Rome, Italy.
José Manuel MartinsMED - Mediterranean Institute for Agriculture, Environment and Development, Universidade de Évora, Pólo da Mitra, Apartado 94, 7006-554, Évora, Portugal.
Marie-José MercatIFIP Institut du porc, La Motte au Vicomte, BP 35104, 35651, Le Rheu Cedex, France.
Yolanda NúñezDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Raquel QuintanillaPrograma de Genética y Mejora Animal, Institute for Research and Technology in Food and Agriculture (IRTA), Torre Marimon, 08140, Caldes de Montbui, Barcelona, Spain.
Čedomir RadovićDepartment of Pig Breeding and Genetics, Institute for Animal Husbandry, 11080, Belgrade-Zemun, Serbia.
Violeta RazmaiteAnimal Science Institute, Lithuanian University of Health Sciences, Baisogala, Lithuania.
Juliette RiquetGénétique Physiologie et Systèmes d'Elevage (GenPhySE), Université de Toulouse, INRA, Chemin de Borde-Rouge 24, Auzeville Tolosane, 31326, Castanet Tolosan, France.
Radomir SavićFaculty of Agriculture, University of Belgrade, Nemanjina 6, 11080, Belgrade-Zemun, Serbia.
Martin ŠkrlepKmetijski Inštitut Slovenije, Hacquetova 17, 1000, Ljubljana, Slovenia.
Graziano UsaiAGRIS SARDEGNA, Loc. Bonassai, 07100, Sassari, Italy.
Christoph ZimmerBäuerliche Erzeugergemeinschaft Schwäbisch Hall, Schwäbisch Hall, Germany.
Cristina OviloDepartamento Mejora Genética Animal, Instituto Nacional de Investigación y Tecnología Agraria yAlimentaria (INIA), Crta. de la Coruña, km. 7, 5, 28040, Madrid, Spain.
Luca FontanesiDepartment of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, Viale Fanin 46, 40127, Bologna, Italy. luca.fontanesi@unibo.it.
University of Bologna · ITInstituto Nacional de Investigación Agropecuaria · UYUniversity of Évora · PTAgricultural institute of Slovenia · SIANT Foundation Italy Onlus · ITEarlham Institute · GBInstitut du Porc · FRInstitute for Animal Husbandry · RSInstitute of Agrifood Research and Technology · ESInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ESLithuanian University of Health Sciences · LTPolytechnic Institute of Viana do Castelo · PTSardegna Agricoltura · ITUniversité Fédérale de Toulouse Midi-Pyrénées · FRUniversity of Belgrade · RSUniversity of East Anglia · GBUniversity of Osijek · HRUniversity of Zagreb · HR

Funding

EGI AnGen1H projectEuropean Open Science Cloud VirAnimalOne projectHorizon 2020 No. 634476 - TREASURE projectMinistero dell'Istruzione, dell'Università e della Ricerca PigPhenomics projectPor Fesr Emilia-Romagna 2014-2020 LIVESTOCK-STOP-COVI projectUniversità di Bologna RFO 2016-2019 programmes
6 · The paper itself

Abstract

Coronaviruses silently circulate in human and animal populations, causing mild to severe diseases. Therefore, livestock are important components of a "One Health" perspective aimed to control these viral infections. However, at present there is no example that considers pig genetic resources in this context. In this study, we investigated the variability of four genes (ACE2, ANPEP and DPP4 encoding for host receptors of the viral spike proteins and TMPRSS2 encoding for a host proteinase) in 23 European (19 autochthonous and three commercial breeds and one wild boar population) and two Asian Sus scrofa populations. A total of 2229 variants were identified in the four candidate genes: 26% of them were not previously described; 29 variants affected the protein sequence and might potentially interact with the infection mechanisms. The results coming from this work are a first step towards a "One Health" perspective that should consider conservation programs of pig genetic resources with twofold objectives: (i) genetic resources could be reservoirs of host gene variability useful to design selection programs to increase resistance to coronaviruses; (ii) the described variability in genes involved in coronavirus infections across many different pig populations might be part of a risk assessment including pig genetic resources.

Indexed as

Genetic VariationAngiotensin-Converting Enzyme 2AnimalsBreedingCD13 AntigensCoronavirus InfectionsDipeptidyl Peptidase 4Gene FrequencyGenetics, PopulationHigh-Throughput Nucleotide SequencingHumansINDEL MutationOne HealthPolymorphism, Single NucleotideReceptors, VirusSerine EndopeptidasesAngiotensin-Converting Enzyme 2CD13 AntigensDipeptidyl Peptidase 4Receptors, VirusSerine Endopeptidases

Identifiers

PMID33564056
PMCPMC7873263
OpenAlexW3127266111

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.