Evidence map›Paper›PMID 33563231›Full record

ArticleBMC infectious diseases2021

Detection of Nipah virus in Pteropus medius in 2019 outbreak from Ernakulam district, Kerala, India.

A B Sudeep, Pragya D Yadav, Mangesh D Gokhale, R Balasubramanian, Nivedita Gupta, Anita Shete, Rajlaxmi Jain, Savita Patil, Rima R Sahay, Dimpal A Nyayanit and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Strengthening preparedness and response to emerging henipavirus diversity.Frontiers in cellular and infection microbiology · 2026
    Review
  6. Article
  7. Review
  8. Article
  9. Nipah virus: pathogenesis, genome, diagnosis, and treatment.Applied microbiology and biotechnology · 2025
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Nipah virus survey inFrontiers in microbiology · 2024
    Article
  16. Article
  17. Surveillance of Nipah virus inFrontiers in microbiology · 2024
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

A B SudeepICMR-National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra, 411001, India.
Pragya D YadavMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India. hellopragya22@gmail.com.
Mangesh D GokhaleICMR-National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra, 411001, India.
R BalasubramanianICMR-National Institute of Virology, Kerala unit, Alappuzha, India.
Nivedita GuptaIndian Council of Medical Research, Ansari Nagar, New Delhi, India.
Anita SheteMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Rajlaxmi JainMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Savita PatilMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Rima R SahayMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Dimpal A NyayanitMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Sanjay GopaleMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Prachi G PardeshiMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Triparna D MajumdarMaximum Containment Laboratory, Indian Council of Medical Research-National Institute of Virology, Sus Road, Pashan, Pune, 411 021, India.
Dilip R PatilICMR-National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra, 411001, India.
A P SugunanICMR-National Institute of Virology, Kerala unit, Alappuzha, India.
Devendra T MouryaICMR-National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra, 411001, India.
ICMR-National Institute of Virology · INIndian Council of Medical Research · IN

Funding

Indian Council of Medical Research -
6 · The paper itself

Abstract

backgroundIn June 2019, Nipah virus (NiV) infection was detected in a 21-year-old male (index case) of Ernakulum, Kerala, India. This study was undertaken to determine if NiV was in circulation in Pteropus species (spp) in those areas where the index case had visit history in 1 month.

methodsSpecialized techniques were used to trap the Pteropus medius bats (random sampling) in the vicinity of the index case area. Throat and rectal swabs samples of 141 bats along with visceral organs of 92 bats were collected to detect the presence of NiV by real-time reverse transcriptase-polymerase chain reaction (qRTPCR). Serum samples of 52 bats were tested for anti-NiV Immunoglobulin (Ig) G antibodies by Enzyme-Linked Immunosorbent Assay (ELISA). The complete genome of NiV was sequenced by next-generation sequencing (NGS) from the tissues and swab samples of bats.

resultsOne rectal swab sample and three bats visceral organs were found positive for the NiV. Interestingly, 20.68% (12/58) of Pteropus were positive for anti-NiV IgG antibodies. NiV sequences of 18,172; 17,200 and 15,100 nucleotide bps could be retrieved from three Pteropus bats.

conclusionA distinct cluster of NiV sequences, with significant net-evolutionary nucleotide divergence, was obtained, suggesting the circulation of new genotype (I-India) in South India. NiV Positivity in Pteropus spp. of bats revealed that NiV is circulating in many districts of Kerala state, and active surveillance of NiV should be immediately set up to know the hotspot area for NiV infection.

Indexed as

AnimalsAntibodies, ViralChiropteraDisease OutbreaksHenipavirus InfectionsHigh-Throughput Nucleotide SequencingImmunoglobulin GIndiaNipah VirusPhylogenyReal-Time Polymerase Chain ReactionRectumRNA, ViralAntibodies, ViralImmunoglobulin GRNA, ViralErnakulumIgG ELISANGSNipah virusPteropus spp

Identifiers

PMID33563231
PMCPMC7871573
OpenAlexW3129081090

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.