ArticleBMC plant biology2021
Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress.
Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 42 citations in OpenAlex.
- Multiple environmental test and genetic mapping jointly reveal genomic loci and associated genes underlying cotton Verticillium wilt resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-wide association study and transcriptomic analysis reveal new genes for unsaturated fatty acid contents in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genome-Wide Association Analysis and Candidate Gene Prediction of Wheat Wet Gluten Content.International journal of molecular sciences · 2026Article
- Deciphering the genetic basis of chlorophyll fluorescence parameters and vegetation indices under heat stress in blueberry.BMC plant biology · 2025Article
- GWAS combined with transcriptomics revealed key regulatory genes for inflorescence traits and fruit set rate in Litchi (Litchi chinensis Sonn.).BMC genomics · 2025Article
- Candidate gene identification and marker development for seed coat peeling rate in peanut (Arachis Hypogaea L.).BMC plant biology · 2025Article
- Genetic dissection of yield and yield-related traits in mungbean based on QTL meta-analysis.Frontiers in genetics · 2025Article
- Decrypting molecular mechanism of heat stress tolerance in rice to tackle climate change challenges through recent approaches.Frontiers in plant science · 2025Review
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- Integrative genomic and transcriptomic approaches decipher pre-harvest sprouting resistance in rice.Frontiers in plant science · 2025Article
- Transcriptome Comparison between Resistant and Susceptible Soybean Cultivars in Response to Inoculation of Phytophthora sojae.The plant pathology journal · 2024Article
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- Uncovering novel genes for drought stress in rice at germination stage using genome wide association study.Frontiers in plant science · 2024Article
- The Genetic Dissection of Nitrogen Use-Related Traits in Flax (International journal of molecular sciences · 2023Article
- QTL Mapping and Genome-Wide Association Study Reveal Genetic Loci and Candidate Genes Related to Soluble Solids Content in Melon.Current issues in molecular biology · 2023Article
- Time-Series Transcriptomic Analysis of Contrasting Rice Materials under Heat Stress Reveals a Faster Response in the Tolerant Cultivar.International journal of molecular sciences · 2023Article
- Recent Molecular Aspects and Integrated Omics Strategies for Understanding the Abiotic Stress Tolerance of Rice.Plants (Basel, Switzerland) · 2023Review
- Utilization of natural alleles for heat adaptability QTLs at the flowering stage in rice.BMC plant biology · 2023Article
- RNA-Seq and Genome-Wide Association Studies Reveal Potential Genes for Rice Seed Shattering.International journal of molecular sciences · 2022Article
- Integrating GWAS and transcriptomics to identify candidate genes conferring heat tolerance in rice.Frontiers in plant science · 2022Article
Corrections and comments
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Authors and funding
17 authors at 3 institutions in 1 country.
Funding
Abstract
backgroundRice plants suffer from the rising temperature which is becoming more and more prominent. Mining heat-resistant genes and applying them to rice breeding is a feasible and effective way to solve the problem.
resultThree main biomass traits, including shoot length, dry weight, and fresh weight, changed after abnormally high-temperature treatment in the rice seedling stage of a recombinant inbred lines and the natural indica germplasm population. Based on a comparison of the results of linkage analysis and genome-wide association analysis, two loci with lengths of 57 kb and 69 kb in qDW7 and qFW6, respectively, were associated with the rice response to abnormally high temperatures at the seedling stage. Meanwhile, based on integrated transcriptome analysis, some genes are considered as important candidate genes. Combining with known genes and analysis of homologous genes, it was found that there are eight genes in candidate intervals that need to be focused on in subsequent research.
conclusionsThe results indicated several relevant loci, which would help researchers to further discover beneficial heat-resistant genes that can be applied to rice heat-resistant breeding.
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