Evidence map›Paper›PMID 33562822›Full record

ArticleMicromachines2021

Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP.

Lisa Becherer, Jacob Friedrich Hess, Sieghard Frischmann, Mohammed Bakheit, Hans Nitschko, Silvina Stinco, Friedrich Zitz, Hannes Hofer, Giampiero Porro, Florian Hausladen and 13 more

Open access · goldAbstract read
In one paragraph

Article in Micromachines, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 2 countries.

Lisa BechererHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.ORCID 0000-0001-7251-5271
Jacob Friedrich HessHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.ORCID 0000-0001-8144-6554
Sieghard FrischmannMast Diagnostica GmbH, Feldstraße 20, 23858 Reinfeld, Germany.
Mohammed BakheitMast Diagnostica GmbH, Feldstraße 20, 23858 Reinfeld, Germany.ORCID 0000-0002-2142-5265
Hans NitschkoDepartment of Virology, Pettenkoferstraße 9a, Max von Pettenkofer-Institute, 80336 Munich, Germany.
Silvina StincoDepartment of Virology, Pettenkoferstraße 9a, Max von Pettenkofer-Institute, 80336 Munich, Germany.
Friedrich ZitzE.L.T. Kunststofftechnik & Werkzeugbau GmbH, Weidenweg 339, 8240 Friedberg, Austria.
Hannes HoferE.L.T. Kunststofftechnik & Werkzeugbau GmbH, Weidenweg 339, 8240 Friedberg, Austria.
Giampiero PorroDatamed srl, Via Achille Grandi 4/6, 20068 Peschiera Borromeo MI, Italy.
Florian HausladenInstitut für Lasertechnologien in der Medizin und Meßtechnik, University of Ulm, Helmholtzstraße 12, 89081 Ulm, Germany.
Karl StockInstitut für Lasertechnologien in der Medizin und Meßtechnik, University of Ulm, Helmholtzstraße 12, 89081 Ulm, Germany.
Dominik DrossartInstitut für Lasertechnologien in der Medizin und Meßtechnik, University of Ulm, Helmholtzstraße 12, 89081 Ulm, Germany.
Holger WurmInstitut für Lasertechnologien in der Medizin und Meßtechnik, University of Ulm, Helmholtzstraße 12, 89081 Ulm, Germany.
Hanna KuhnHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Dominik HuberHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Tobias HutzenlaubHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Nils PaustHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Mark KellerHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.ORCID 0000-0002-7602-0484
Oliver StrohmeierHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Simon WadleHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Nadine BorstHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Roland ZengerleHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
Felix von StettenHahn-Schickard, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
University of Freiburg · DEUniversität Ulm · DELudwig-Maximilians-Universität München · DEDataMED (Italy) · ITHahn-Schickard-Gesellschaft für angewandte Forschung · DE

Funding

Bundesministerium für Bildung und Forschung 031B0132B
6 · The paper itself

Abstract

This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isothermal amplification). A disposable microfluidic LabDisk with pre-stored reagents performs automated nucleic acid extraction, reaction setup, emulsification, reverse transcription, digital DNA amplification, and quantitative fluorogenic endpoint detection with universal reporter molecules. Automated nucleic acid extraction from a suspension of HTLV-1-infected CD4+ T-lymphocytes (MT-2 cells) yielded 8 ± 7 viral nucleic acid copies per MT-2 cell, very similar to the manual reference extraction (7 ± 2 nucleic acid copies). Fully automated sample processing from whole blood spiked with MT-2 cells showed a comparable result of 7 ± 3 copies per MT-2 cell after a run time of two hours and 10 min.

Indexed as

centrifugal microfluidicsdigital loop-mediated isothermal amplificationhuman T-cell lymphotropic virus 1point-of-care testingproviral load measurements

Identifiers

PMID33562822
PMCPMC7915047
OpenAlexW3128843546

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.