Evidence map›Paper›PMID 33561222›Full record

ArticleG3 (Bethesda, Md.)2021

Chromosomal assembly of the nuclear genome of the endosymbiont-bearing trypanosomatid Angomonas deanei.

John W Davey, Carolina M C Catta-Preta, Sally James, Sarah Forrester, Maria Cristina M Motta, Peter D Ashton, Jeremy C Mottram

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

John W DaveyDepartment of Biology, University of York, York YO10 5DD, UK.
Carolina M C Catta-PretaDepartment of Biology, University of York, York YO10 5DD, UK.
Sally JamesDepartment of Biology, University of York, York YO10 5DD, UK.
Sarah ForresterDepartment of Biology, University of York, York YO10 5DD, UK.
Maria Cristina M MottaLaboratório de Ultraestrutura Celular Hertha Meyer, Instituto de Biofísica Carlos Chagas Filho, Departamento de Biologia Celular e Parasitologia, Centro de Ciências da Saúde, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
Peter D AshtonDepartment of Biology, University of York, York YO10 5DD, UK.
Jeremy C MottramDepartment of Biology, University of York, York YO10 5DD, UK.

Funding

Wellcome Trust 200807/Z/16/Z
6 · The paper itself

Abstract

Angomonas deanei is an endosymbiont-bearing trypanosomatid with several highly fragmented genome assemblies and unknown chromosome number. We present an assembly of the A. deanei nuclear genome based on Oxford Nanopore sequence that resolves into 29 complete or close-to-complete chromosomes. The assembly has several previously unknown special features; it has a supernumerary chromosome, a chromosome with a 340-kb inversion, and there is a translocation between two chromosomes. We also present an updated annotation of the chromosomal genome with 10,365 protein-coding genes, 59 transfer RNAs, 26 ribosomal RNAs, and 62 noncoding RNAs.

Indexed as

SymbiosisTrypanosomatinaBacteriaChromosomesGenomeAngomonas deanei Carvalho (ATCC® PRA-265™)genome assemblyOxford Nanopore

Identifiers

PMID33561222
PMCPMC8022732

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.