Evidence map›Paper›PMID 33560568›Full record

ArticleHuman mutation2021

Update of the Pompe variant database for the prediction of clinical phenotypes: Novel disease-associated variants, common sequence variants, and results from newborn screening.

Douglas O S de Faria, Stijn L M In 't Groen, Marianne Hoogeveen-Westerveld, Monica Y Nino, Ans T van der Ploeg, Atze J Bergsma, W W M Pim Pijnappel

Abstract read
In one paragraph

Article in Human mutation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. What's new and what's next for gene therapy in Pompe disease?Expert opinion on biological therapy · 2022
    Pooled it
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  14. [Juvenile Pompe disease: Undescribed genotype. First report in Quintana Roo].Revista medica del Instituto Mexicano del Seguro Social · 2024
    Article
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  16. Molecular genetics and metabolism reports · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Douglas O S de FariaDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Stijn L M In 't GroenDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Marianne Hoogeveen-WesterveldDepartment of Clinical Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Monica Y NinoDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Ans T van der PloegDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Atze J BergsmaDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.
W W M Pim PijnappelDepartment of Pediatrics, Erasmus University Medical Center, Rotterdam, the Netherlands.ORCID 0000-0002-7042-2482

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pompe disease is an inherited disorder caused by disease-associated variants in the acid α-glucosidase gene (GAA). The Pompe disease GAA variant database (http://www.pompevariantdatabase.nl) is a curated, open-source, disease-specific database, and lists disease-associated GAA variants, in silico predictions, and clinical phenotypes reported until 2016. Here, we provide an update to include 226 disease-associated variants that were published until 2020. We also listed 148 common GAA sequence variants that do not cause Pompe disease. GAA variants with unknown severity that were identified only in newborn screening programs were listed as a new feature to indicate the reason why phenotypes were still unknown. Expression studies were performed for common missense variants to predict their severity. The updated Pompe disease GAA variant database now includes 648 disease-associated variants, 26 variants from newborn screening, and 237 variants with unknown severity. Regular updates of the Pompe disease GAA variant database will be required to improve genetic counseling and the study of genotype-phenotype relationships.

Indexed as

Glycogen Storage Disease Type IINeonatal Screeningalpha-GlucosidasesGenetic Predisposition to DiseaseHumansInfant, NewbornPhenotypealpha-Glucosidasesdatabasedisease‐associated variantsGAANBSPompe diseaseSNP

Identifiers

PMID33560568
PMCPMC7898817

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.