Evidence map›Paper›PMID 33559841›Full record

ReviewCurrent osteoporosis reports2021

Single Cell Omics for Musculoskeletal Research.

Muhammad Farooq Rai, Chia-Lung Wu, Terence D Capellini, Farshid Guilak, Amanda R Dicks, Pushpanathan Muthuirulan, Fiorella Grandi, Nidhi Bhutani, Jennifer J Westendorf

Open access · greenAbstract readReview
In one paragraph

Review in Current osteoporosis reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  7. Spatial transcriptomic applications in orthopedics.Connective tissue research · 2025
    Review
  8. Article
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  13. Article
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  18. Article
  19. Single-cell RNA-sequencing atlas of bovine caudal intervertebral discs: Discovery of heterogeneous cell populations with distinct roles in homeostasis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Muhammad Farooq RaiDepartment of Orthopaedic Surgery, Washington University, St. Louis, MO, USA.
Chia-Lung WuDepartment of Orthopaedic Surgery, Washington University and Shriners Hospitals for Children, St. Louis, MO, USA.
Terence D CapelliniDepartment of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Farshid GuilakDepartment of Orthopaedic Surgery, Washington University and Shriners Hospitals for Children, St. Louis, MO, USA.
Amanda R DicksDepartment of Orthopaedic Surgery, Washington University and Shriners Hospitals for Children, St. Louis, MO, USA.
Pushpanathan MuthuirulanDepartment of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Fiorella GrandiDepartment of Orthopedic Surgery, Stanford University, Stanford, CA, USA.
Nidhi BhutaniDepartment of Orthopedic Surgery, Stanford University, Stanford, CA, USA.
Jennifer J WestendorfDepartment of Orthopedic Surgery, Mayo Clinic, Rochester, MN, USA. westendorf.jennifer@mayo.edu.ORCID 0000-0002-4464-6108
Shriners Hospitals for Children - St. Louis · USHarvard University · USStanford University · USMayo Clinic in Arizona · USWashington University in St. Louis · US

Funding

VISCOELASTIC PROPERTIES OF NORMAL AND OA CHONDRONSR01AG015768 · NIA · WASHINGTON UNIVERSITY · PI GUILAK, FARSHID · 1998 to 2022
$7.7M
Uncovering the Genetic Mechanisms Behind Joint-Specific OsteoarthritisR01AR070139 · NIAMS · HARVARD UNIVERSITY · PI CAPELLINI, TERENCE D · 2018 to 2022
$3.3M
Establishing a Single-Cell Proteomic Atlas for Normal and Osteoarthritic Articular CartilageR01AR077530 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2021 to 2025
$2.6M
Evaluating the Potential of Human Induced Pluripotent Stem Cells (hiPSC) For Cartilage RepairR01AR070864 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2017 to 2021
$2.2M
Targeting DNA Demethylation Regulators in OsteoarthritisR01AR070865 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2016 to 2020
$1.7M
Epigenetic Regulation of Chondrogenesis and Cartilage DevelopmentR00AR075899 · NIAMS · UNIVERSITY OF ROCHESTER · PI WU, CHIA-LUNG · 2021 to 2023
$1.1M
Epigenetic Regulation of Chondrogenesis and Cartilage DevelopmentK99AR075899 · NIAMS · WASHINGTON UNIVERSITY · PI WU, CHIA-LUNG · 2019 to 2020
$180k
NIAMS NIH HHS K99 AR075899NIAMS NIH HHS R00 AR075899NIAMS NIH HHS R01 AR070139NIAMS NIH HHS R01 AR070864NIAMS NIH HHS R01 AR070865NIAMS NIH HHS R01 AR077530NIA NIH HHS R01 AG015768
6 · The paper itself

Abstract

purpose of reviewThe ability to analyze the molecular events occurring within individual cells as opposed to populations of cells is revolutionizing our understanding of musculoskeletal tissue development and disease. Single cell studies have the great potential of identifying cellular subpopulations that work in a synchronized fashion to regenerate and repair damaged tissues during normal homeostasis. In addition, such studies can elucidate how these processes break down in disease as well as identify cellular subpopulations that drive the disease. This review highlights three emerging technologies: single cell RNA sequencing (scRNA-seq), Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq), and Cytometry by Time-Of-Flight (CyTOF) mass cytometry. RECENT

findingsTechnological and bioinformatic tools to analyze the transcriptome, epigenome, and proteome at the individual cell level have advanced rapidly making data collection relatively easy; however, understanding how to access and interpret the data remains a challenge for many scientists. It is, therefore, of paramount significance to educate the musculoskeletal community on how single cell technologies can be used to answer research questions and advance translation. This article summarizes talks given during a workshop on "Single Cell Omics" at the 2020 annual meeting of the Orthopedic Research Society. Studies that applied scRNA-seq, ATAC-seq, and CyTOF mass cytometry to cartilage development and osteoarthritis are reviewed. This body of work shows how these cutting-edge tools can advance our understanding of the cellular heterogeneity and trajectories of lineage specification during development and disease.

Indexed as

Chromatin Immunoprecipitation SequencingFlow CytometryHomeostasisHumansMusculoskeletal DevelopmentMusculoskeletal DiseasesMusculoskeletal SystemRNA-SeqSingle-Cell AnalysisATAC-seqCartilageCyTOFOsteoarthritisSingle cell RNA-seq

Identifiers

PMID33559841
PMCPMC8743139
OpenAlexW3127320769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.