Evidence map›Paper›PMID 33558761›Full record

ArticleNature structural & molecular biology2021

Structural insights into the regulation of human serine palmitoyltransferase complexes.

Yingdi Wang, Yiming Niu, Zhe Zhang, Kenneth Gable, Sita D Gupta, Niranjanakumari Somashekarappa, Gongshe Han, Hongtu Zhao, Alexander G Myasnikov, Ravi C Kalathur and 2 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
  2. Deletion of exon 2 in ALS-linkedLife science alliance · 2026
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  3. Cells · 2026
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  4. Characterization of novel and recurrentJournal of neuromuscular diseases · 2026
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  7. ORMDL Proteins Turnover via Proteasome and Autophagy Is Cell-Type Dependent and Tied to Ceramide Homeostasis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Regulation of cellular and systemic sphingolipid homeostasis.Nature reviews. Molecular cell biology · 2024
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yingdi WangDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yiming NiuLaboratory of Molecular Neurobiology and Biophysics, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Zhe ZhangState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China.
Kenneth GableDepartment of Biochemistry and Molecular Biology, Uniformed Services University of Health Sciences, Bethesda, MD, USA.
Sita D GuptaDepartment of Biochemistry and Molecular Biology, Uniformed Services University of Health Sciences, Bethesda, MD, USA.
Niranjanakumari SomashekarappaDepartment of Biochemistry and Molecular Biology, Uniformed Services University of Health Sciences, Bethesda, MD, USA.
Gongshe HanDepartment of Biochemistry and Molecular Biology, Uniformed Services University of Health Sciences, Bethesda, MD, USA.
Hongtu ZhaoLaboratory of Membrane Biology and Biophysics, The Rockefeller University, Howard Hughes Medical Institute, New York, NY, USA.
Alexander G MyasnikovDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Ravi C KalathurDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Teresa M DunnDepartment of Biochemistry and Molecular Biology, Uniformed Services University of Health Sciences, Bethesda, MD, USA.
Chia-Hsueh LeeDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA. ChiaHsueh.Lee@stjude.org.ORCID http://orcid.org/0000-0003-0819-6477

Funding

Structural and Functional Studies of Human Serine Palmitoyltransferase ComplexesR01GM143282 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, CHIA-HSUEH · 2021 to 2025
$1.8M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM143282
6 · The paper itself

Abstract

Sphingolipids are essential lipids in eukaryotic membranes. In humans, the first and rate-limiting step of sphingolipid synthesis is catalyzed by the serine palmitoyltransferase holocomplex, which consists of catalytic components (SPTLC1 and SPTLC2) and regulatory components (ssSPTa and ORMDL3). However, the assembly, substrate processing and regulation of the complex are unclear. Here, we present 8 cryo-electron microscopy structures of the human serine palmitoyltransferase holocomplex in various functional states at resolutions of 2.6-3.4 Å. The structures reveal not only how catalytic components recognize the substrate, but also how regulatory components modulate the substrate-binding tunnel to control enzyme activity: ssSPTa engages SPTLC2 and shapes the tunnel to determine substrate specificity. ORMDL3 blocks the tunnel and competes with substrate binding through its amino terminus. These findings provide mechanistic insights into sphingolipid biogenesis governed by the serine palmitoyltransferase complex.

Indexed as

Cryoelectron MicroscopyBinding SitesBiocatalysisCatalytic DomainHumansLigandsMembrane ProteinsModels, MolecularMutationReproducibility of ResultsSerine C-PalmitoyltransferaseSubstrate SpecificityLigandsMembrane ProteinsORMDL3 protein, humanSerine C-PalmitoyltransferaseSPTLC1 protein, humanSPTLC2 protein, humanssSPTa

Identifiers

PMID33558761
PMCPMC9812531

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.