ArticleScientific data2021
Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing.
Article in Scientific data, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed, 73 citations in OpenAlex.
- Dissection of local haplotype diversity at soybean rust loci reveals resistance-associated and context-dependent variation patterns in diverse germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Development of user-selectable diverse sets of cultivated and wild soybean germplasm for genetic and breeding applications.The plant genome · 2026Article
- Molecular polymorphisms that underlie trait variation in crops: Lessons learned from soybean.The plant genome · 2026Review
- Deciphering the role of monoacylglycerol lipases (MAGL) under abiotic stress and lipid metabolism in soybean (Glycine max L.).Plant biotechnology journal · 2025Article
- Landscape of rare-allele variants in cultivated and wild soybean genomes.The plant genome · 2025Article
- The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars.Nature genetics · 2025Article
- A genome-wide association study prioritizes VRN1-2 as a candidate gene associated with plant height in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- NAVIP: Unraveling the influence of neighboring small sequence variants on functional impact prediction.PLoS computational biology · 2025Article
- Genetic diversity and population structure of soybean (Glycine max (L.) Merril) germplasm.PloS one · 2025Article
- Deep short-read sequences facilitated identification of seven putative drought tolerance genes in a genome-wide association study in soybean.Frontiers in plant science · 2025Article
- Soybean genomics research community strategic plan: A vision for 2024-2028.The plant genome · 2024Article
- Finger millet: a hero in the making to combat food insecurity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- A novel natural variation in the promoter of GmCHX1 regulates conditional gene expression to improve salt tolerance in soybean.Journal of experimental botany · 2024Article
- Article
- Fast and Efficient Root Phenotyping via Pose Estimation.Plant phenomics (Washington, D.C.) · 2024Article
- Population Structure and Genetic Diversity of the 175 Soybean Breeding Lines and Varieties Cultivated in West Siberia and Other Regions of Russia.Plants (Basel, Switzerland) · 2023Article
- SoyDBean: a database for SNPs reconciliation by multiple versions of soybean reference genomes.Scientific reports · 2023Article
- Genome editing and chromosome engineering in plants.The plant genome · 2023Article
- DT-PICS: An Efficient and Cost-Effective SNP Selection Method for the Germplasm Identification of Arabidopsis.International journal of molecular sciences · 2023Article
- The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis.BMC genomics · 2023Article
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Authors and funding
25 authors at 13 institutions in 4 countries.
Funding
Abstract
We report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.