Evidence map›Paper›PMID 33558544›Full record

ArticleNPJ biofilms and microbiomes2021

Long-term warming in a Mediterranean-type grassland affects soil bacterial functional potential but not bacterial taxonomic composition.

Ying Gao, Junjun Ding, Mengting Yuan, Nona Chiariello, Kathryn Docherty, Chris Field, Qun Gao, Baohua Gu, Jessica Gutknecht, Bruce A Hungate and 6 more

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 4 countries.

Ying GaoInstitute of Desertification Studies, Chinese Academy of Forestry, Beijing, China.
Junjun DingState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Mengting YuanInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.
Nona ChiarielloDepartment of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA.
Kathryn DochertyDepartment of Biological Sciences, Western Michigan University, Kalamazoo, MI, USA.
Chris FieldDepartment of Global Ecology, Carnegie Institution for Science, Stanford, CA, USA.ORCID 0000-0002-1684-8247
Qun GaoState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Baohua GuEnvironmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.ORCID 0000-0002-7299-2956
Jessica GutknechtDepartment of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle, Germany.
Bruce A HungateCenter for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.ORCID 0000-0002-7337-1887
Xavier Le RouxMirobial Ecology Centre LEM, INRA, CNRS, University of Lyon, University Lyon 1, UMR INRA 1418, Villeurbanne, France.
Audrey NiboyetInstitut d'Ecologie et des Sciences de l'Environnement de Paris (Sorbonne Université, CNRS, INRA, IRD, Université Paris Diderot, UPEC), Paris, France.
Qi QiState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Zhou ShiInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.
Jizhong ZhouState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
Yunfeng YangState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China. yangyf@tsinghua.edu.cn.
State Key Joint Laboratory of Environment Simulation and Pollution Control · CNCarnegie Institution for Science · USUniversity of Oklahoma · USCentre National de la Recherche Scientifique · FRLawrence Berkeley National Laboratory · USNorthern Arizona University · USOak Ridge National Laboratory · USUniversité Claude Bernard Lyon 1 · FRUniversity of Minnesota · USWestern Michigan University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Climate warming is known to impact ecosystem composition and functioning. However, it remains largely unclear how soil microbial communities respond to long-term, moderate warming. In this study, we used Illumina sequencing and microarrays (GeoChip 5.0) to analyze taxonomic and functional gene compositions of the soil microbial community after 14 years of warming (at 0.8-1.0 °C for 10 years and then 1.5-2.0 °C for 4 years) in a Californian grassland. Long-term warming had no detectable effect on the taxonomic composition of soil bacterial community, nor on any plant or abiotic soil variables. In contrast, functional gene compositions differed between warming and control for bacterial, archaeal, and fungal communities. Functional genes associated with labile carbon (C) degradation increased in relative abundance in the warming treatment, whereas those associated with recalcitrant C degradation decreased. A number of functional genes associated with nitrogen (N) cycling (e.g., denitrifying genes encoding nitrate-, nitrite-, and nitrous oxidereductases) decreased, whereas nifH gene encoding nitrogenase increased in the warming treatment. These results suggest that microbial functional potentials are more sensitive to long-term moderate warming than the taxonomic composition of microbial community.

Indexed as

ArchaeaBacteriaCarbonFungiGene Expression ProfilingGenes, ArchaealGenes, BacterialGenes, FungalGlobal WarmingGrasslandHigh-Throughput Nucleotide SequencingNitrogenOligonucleotide Array Sequence AnalysisPhylogenyRNA, Ribosomal, 16SSequence Analysis, RNACarbonNitrogenRNA, Ribosomal, 16S

Identifiers

PMID33558544
PMCPMC7870951
OpenAlexW3128464501

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.