Evidence map›Paper›PMID 33557880›Full record

ArticleCell communication and signaling : CCS2021

Computer-aided design of PVR mutants with enhanced binding affinity to TIGIT.

Xiaowen Zhou, Jiangfeng Du, Xiuman Zhou, Xiaoshuang Niu, Wanqiong Li, Chunxia Chen, Sifan Lv, Aijun Wu, Shanshan Gou, Yixuan Sun and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell communication and signaling : CCS, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Xiaowen Zhou *School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Jiangfeng Du *School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Xiuman ZhouSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Xiaoshuang NiuSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Wanqiong LiSchool of Pharmaceutical Sciences (Shenzhen), Sun Yat-Sen University, Shenzhen, 518107, China.
Chunxia ChenSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Sifan LvSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Aijun WuSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Shanshan GouSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Yixuan SunSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Wenjie ZhaiSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Lu QiuSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Yuanming QiSchool of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China.
Wenshan Zhao *School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China. zhaowsh07@zzu.edu.cn.
Yanfeng Gao *School of Life Sciences, Zhengzhou University, Zhengzhou, 450001, China. gaoyf29@mail.sysu.edu.cn.ORCID 0000-0001-5533-7100
Zhengzhou University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTIGIT, as a novel immune checkpoint molecule involved in T cell and NK cell anergy, could induce the immune tolerance and escape through binding with its ligand PVR. Blockade of TIGIT/PVR is considered as a promising strategy in cancer immunotherapy. However, to facilitate the design of inhibitors targeting TIGIT/PVR, the structural characteristics and binding mechanism still need to be further studied.

methodsIn this study, molecular dynamics (MD) simulations and in silico mutagenesis were used to analyze the interaction between TIGIT and its ligand PVR. Then, PVR mutants were designed and their activities were determined by using TIGIT overexpressed Jurkat cells.

resultsThe results suggested that the loops of PVR (CC' loop, C'C″ loop, and FG loop) underwent a large intra-molecular rearrangement, and more hydrogen bond crosslinking between PVR and TIGIT were formed during MD simulations. The potential residues for PVR to interact with TIGIT were identified and utilized to predict high affinity PVR mutants. Through the biological activity evaluation, four PVR mutants (

conclusionsThe MD simulations analysis provided new insights into the TIGIT/PVR interaction model, and the identified PVR mutants (

Indexed as

AnimalsCHO CellsCoculture TechniquesComputer-Aided DesignCricetulusHEK293 CellsHumansJurkat CellsMolecular Dynamics SimulationMutationProtein BindingReceptors, ImmunologicReceptors, Viruspoliovirus receptorReceptors, ImmunologicReceptors, VirusTIGIT protein, humanCancer immunotherapyDrug designMolecular dynamicsMutagenesisTIGIT/PVR

Identifiers

PMID33557880
PMCPMC7869511
OpenAlexW3128200593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.