Evidence map›Paper›PMID 33557849›Full record

ArticleMicrobial cell factories2021

Direct RBS Engineering of the biosynthetic gene cluster for efficient productivity of violaceins in E. coli.

Yuyang Zhang, Hongping Chen, Yao Zhang, Huifang Yin, Chenyan Zhou, Yan Wang

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

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  18. EngineeredGut microbes
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yuyang ZhangSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China. yyzhang2018@xxmu.edu.cn.ORCID http://orcid.org/0000-0002-7458-5684
Hongping ChenSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China.
Yao ZhangSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China.
Huifang YinSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China.
Chenyan ZhouSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China.
Yan WangSchool of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, 453003, Henan, China. wangyan19820527@163.com.
Henan Institute of Technology · CNXinxiang Medical University · CN

Funding

National Natural Science Foundation of China Grant No. 81903525Research Fund for High-level Talents of Xinxiang Medical University No. 300-505272
6 · The paper itself

Abstract

backgroundViolaceins have attracted much attention as potential targets used in medicines, food additives, insecticides, cosmetics and textiles, but low productivity was the key factor to limit their large-scale applications. This work put forward a direct RBS engineering strategy to engineer the violacein biosynthetic gene cluster cloned from Chromobacterium violaceum ATCC 12,472 to efficiently improve the fermentation titers.

resultsThrough four-rounds of engineering of the native RBSs within the violaceins biosynthetic operon vioABCDE, this work apparently broke through the rate-limiting steps of intermediates conversion, resulting in 2.41-fold improvement of violaceins production compared to the titers of the starting strain Escherichia coli BL21(DE3) (Vio12472). Furthermore, by optimizing the batch-fermentation parameters including temperature, concentration of IPTG inducer and fermentation time, the maximum yield of violaceins from (BCDE)m (tnaA

conclusionsTo our knowledge, this is the first time that a direct RBS engineering strategy is used for the biosynthesis of natural products, having the potential for a greater improvement of the product yields within tryptophan hyperproducers and simultaneously avoiding the costly low temperature cultivation for large-scale industrial production of violaciens. This direct RBS engineering strategy could also be easily and helpfully used in engineering the native RBSs of other larger and value-added natural product biosynthetic gene clusters by widely used site-specific mutagenesis methods represented by inverse PCR or CRISPR-Cas9 techniques to increase their fermentation titers in the future.

Indexed as

Escherichia coliGenes, BacterialMetabolic EngineeringMultigene FamilyChromobacteriumIndolesIndolesviolaceinBiosynthetic gene clusterDirect RBS engineering strategyHigher temperatureRate‐limiting stepsViolaceins

Identifiers

PMID33557849
PMCPMC7869524
OpenAlexW3112422141

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.