Evidence map›Paper›PMID 33555975›Full record

ArticleZebrafish2021

TAEL 2.0: An Improved Optogenetic Expression System for Zebrafish.

Jesselynn LaBelle, Adela Ramos-Martinez, Kyle Shen, Laura B Motta-Mena, Kevin H Gardner, Stefan C Materna, Stephanie Woo

Abstract read
In one paragraph

Article in Zebrafish, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Tunable gene expression in zebrafish using RiboSCALE.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Optogenetic control of Nodal signaling patterns.Development (Cambridge, England) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Optogenetic control of Nodal signaling patterns.bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Optogenetic Signaling Activation in Zebrafish Embryos.Journal of visualized experiments : JoVE · 2023
    Article
  12. A spatiotemporal barrier formed by Follistatin is required for left-right patterning.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Review
  14. A Single-Component Blue Light-Induced System Based on EL222 inInternational journal of molecular sciences · 2022
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jesselynn LaBelleDepartment of Molecular Cell Biology, University of California Merced, Merced, California, USA.
Adela Ramos-MartinezDepartment of Molecular Cell Biology, University of California Merced, Merced, California, USA.
Kyle ShenDepartment of Molecular Cell Biology, University of California Merced, Merced, California, USA.
Laura B Motta-MenaOptologix, Inc., Dallas, Texas, USA.
Kevin H GardnerStructural Biology Initiative, CUNY Advanced Science Research Center, New York, New York, USA.
Stefan C MaternaDepartment of Molecular Cell Biology, University of California Merced, Merced, California, USA.
Stephanie WooDepartment of Molecular Cell Biology, University of California Merced, Merced, California, USA.

Funding

Summer Undergraduate Research Support - Ms. Anastasiia FisiukR01GM106239 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2013 to 2024
$4.5M
In vivo analysis of gastrointestinal epithelium morphogenesisR03DK106358 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WOO, STEPHANIE · 2015 to 2016
$158k
NIDDK NIH HHS R03 DK106358NIGMS NIH HHS R01 GM106239
6 · The paper itself

Abstract

Inducible gene expression systems are valuable tools for studying biological processes. We previously developed an optogenetic gene expression system called TAEL that is optimized for use in zebrafish. When illuminated with blue light, TAEL transcription factors dimerize and activate gene expression downstream of the TAEL-responsive C120 promoter. By using light as the inducing agent, the TAEL/C120 system overcomes limitations of traditional inducible expression systems by enabling fine spatial and temporal regulation of gene expression. In this study, we describe ongoing efforts to improve the TAEL/C120 system. We made modifications to both the TAEL transcriptional activator and the C120 regulatory element, collectively referred to as TAEL 2.0. We demonstrate that TAEL 2.0 consistently induces higher levels of reporter gene expression and at a faster rate, but with comparable background and toxicity as the original TAEL system. With these improvements, we were able to create functional stable transgenic lines to express the TAEL 2.0 transcription factor either ubiquitously or with a tissue-specific promoter. We demonstrate that the ubiquitous line in particular can be used to induce expression at late embryonic and larval stages, addressing a major deficiency of the original TAEL system. This improved optogenetic expression system will be a broadly useful resource for the zebrafish community.

Indexed as

LightZebrafishAnimalsAnimals, Genetically ModifiedCRISPR-Cas SystemsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGenes, ReporterOptogeneticsSignal Transductiongene expressionlight-activated transcription factoroptogeneticszebrafish

Identifiers

PMID33555975
PMCPMC8020536

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.