Evidence map›Paper›PMID 33555507›Full record

ArticleGenes & genomics2021

Genome wide methylation analysis to uncover genes related to recurrent pregnancy loss.

Lixia Zhou, Yudong Pu, Yuxun Zhou, Bin Wang, Ye Chen, Yang Bai, Shuzhen He

Abstract read
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In one paragraph

Article in Genes & genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lixia ZhouObstetrics, Songshan Lake Central Hospital, No 1 Xianglong Road, Shilong Town, Dongguan, 523326, Guangdong, China.
Yudong PuObstetrics, Songshan Lake Central Hospital, No 1 Xianglong Road, Shilong Town, Dongguan, 523326, Guangdong, China.
Yuxun ZhouCollege of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai, China.
Bin WangCollege of Chemistry, Chemical Engineering and Biotechnology, Donghua University, Shanghai, China.
Ye ChenShanghai Biowing Applied Biotechnology Co., Ltd, Shanghai, China.
Yang BaiShanghai Biowing Applied Biotechnology Co., Ltd, Shanghai, China.
Shuzhen HeObstetrics, Songshan Lake Central Hospital, No 1 Xianglong Road, Shilong Town, Dongguan, 523326, Guangdong, China. 2896010284@qq.com.
Songshan Lake Materials Laboratory · CNDonghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecurrent pregnancy loss (RPL) refers to two or more consecutive spontaneous abortion before 24 weeks of gestation, representing 1% of couples of childbearing age. Epigenetic factors including dysregulation of DNA methylation of some genes may play a role in RPL.

objectiveTo identify RPL related genes modulated by DNA methylation expressed in decidua and blood.

methodsThree decidua samples each from RPL patients and normal controls were recruited to perform genome-wide bisulfite sequencing (GWBS) and transcriptome sequencing. Based on the above results, 22.52 kb of differential methylation regions (DMRs) from 17 genes were verified by bisulfite sequencing PCR at specific region (Hi-MethylSeq) in another 15 decidua (7RPL vs. 8 Controls) and 13 blood (5RPL vs. 8 Controls) samples.

results23 genes showed significantly differential cytosine methylation status and distinct expression level between PRL patients and healthy controls synergistically. Three signaling pathways were found to be shared between genes with both hypomethylated differential methylation regions (DMR) and upregulated differential gene expression (DGE). The results from Hi-MethylSeq showed that the hypermethylation of SGK1 in both blood and decidua samples in RPL patients, which was consistent to its lower expression in endometrium reported earlier. SGK3 and CREB5 also showed modulated methylation level in RPL decidua.

conclusionOur finding supported that aberrant methylation of SGK1 and CREB5 could be a cause of the dysregulation of these gens in the endometrium, which is one of cause of reproductive failure. The function of SGK3 in reproduction system deserves further investigation.

Indexed as

DNA MethylationAbortion, HabitualAdultCyclic AMP Response Element-Binding Protein ADeciduaFemaleGenome, HumanHumansImmediate-Early ProteinsPregnancyProtein Serine-Threonine KinasesRNA-SeqSerum-Glucocorticoid Regulated KinasesYoung AdultCREB5 protein, humanCyclic AMP Response Element-Binding Protein AImmediate-Early ProteinsProtein Serine-Threonine KinasesSerum-Glucocorticoid Regulated KinasesSGK3 protein, humanGenomic DNA methylation analysisHi-MethySeqRecurrent pregnancy lossSGK gene

Identifiers

PMID33555507
OpenAlexW3128956227

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.