Evidence map›Paper›PMID 33555486›Full record

ArticleJournal of molecular modeling2021

Elucidation of the hetero-dimeric binding activity of LasR and RhlR proteins with the promoter DNA and the role of a specific Phe residue during the biosynthesis of HCN synthase from opportunistic pathogen Pseudomonas aeruginosa.

Nilkanta Chowdhury, Angshuman Bagchi

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Article in Journal of molecular modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nilkanta ChowdhuryDepartment of Biochemistry and Biophysics, University of Kalyani, Kalyani, Nadia, 741235, India.
Angshuman BagchiDepartment of Biochemistry and Biophysics, University of Kalyani, Kalyani, Nadia, 741235, India. angshu@klyuniv.ac.in.
University of Kalyani · IN

Funding

Indian Council of Medical Research BIC/12(02)/2014
6 · The paper itself

Abstract

Pseudomonas aeruginosa is an opportunistic human pathogen. It causes secondary infections in patients suffering from cancer and other immunological disorders. The pathogenicity of the organism is dependent on the ability of the organism to code for hydrogen cyanide (HCN), the synthesis of which is mediated by HCN synthase enzyme. HCN synthase is encoded by hcnABC operon. The transcription of the operon is controlled by a complex interplay between the proteins LasR and RhlR. Till date, there is no report that deals with the binding interactions of the RhlR-LasR heterodimer with the promoter DNA region of the hcnABC operon. We, for the first time, tried to analyse the binding modes of the RhlR-LasR heterodimer with the promoter DNA regions. From our work, we could predict the importance of a specific amino acid residue Phe214 from RhlR which might be considered to have the desired specificity to bind to the promoter DNA. Therefore, the amino acid Phe214 may be targeted to develop suitable ligands to eradicate the spread of secondary infections by Pseudomonas aeruginosa.

Indexed as

Promoter Regions, GeneticBacterial ProteinsBinding SitesHydrogen CyanideMolecular Docking SimulationMolecular Dynamics SimulationOxidoreductases Acting on CH-NH2 Group DonorsProtein BindingProtein MultimerizationPseudomonas aeruginosaTrans-ActivatorsBacterial Proteinsglycine dehydrogenase (cyanide-forming)Hydrogen CyanideLasR protein, Pseudomonas aeruginosaOxidoreductases Acting on CH-NH2 Group DonorsTrans-ActivatorsDNA-protein interactionsHeterodimer formationLasR-RhlR heterodimerMolecular dockingMolecular dynamics simulations

Identifiers

PMID33555486
OpenAlexW3128282005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.