Evidence map›Paper›PMID 33555481›Full record

ArticleJournal of plant research2021

SAP130 and CSN1 interact and regulate male gametogenesis in Arabidopsis thaliana.

Shiori S Aki, Kei Yura, Takashi Aoyama, Tomohiko Tsuge

Abstract read
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In one paragraph

Article in Journal of plant research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Shiori S AkiMolecular Biology Laboratory, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Kei YuraSchool of Advanced Science and Engineering, Waseda University, 513 Tsurumaki, Waseda, Shinjuku, Tokyo, 162-0041, Japan.
Takashi AoyamaMolecular Biology Laboratory, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Tomohiko TsugeMolecular Biology Laboratory, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan. tsuge@scl.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0003-2736-0295
Kyoto University · JPOtsuka (Japan) · JP

Funding

International Joint Laboratory for MicroNano Manufacturing and Measurement Technologies (CN) Grant 2020Japan Agency for Medical Research and Development (JP) JP20am0101065 (support No. 2395)Japan Society for the Promotion of Science JP20K15770Japan Society for the Promotion of Science JP22570041Japan Society for the Promotion of Science JP23120515Japan Society for the Promotion of Science JP25440133Japan Society for the Promotion of Science JSPS-CNR 2008-2010Japan Society for the Promotion of Science JSPS-NSFC 2007-2009Japan Society for the Promotion of Science JSPS-NSFC 2011-2013Kyoto University Research Unit for Development of Global Sustainability (JP) Exploratory Research Grants 2014-2015, 2016-2017Ministry of Foreign Affairs (JP) Executive Program of Cooperation in the Fields of Science &Technology between the Government of Italy and the Government of Japan [IBPM-CNR 2013-2015]
6 · The paper itself

Abstract

COP9 signalosome (CSN) is a nuclear complex composed of eight distinct subunits that governs vast developmental processes in Arabidopsis thaliana (L.) Heynh. The null alleles of csn mutants display pleiotropic phenotypes that result in seedling lethality. To date, several partially complemented transgenic plants, expressing the particular CSN subunit in its corresponding null mutant allele, were utilized to bypass seedling lethality and investigate CSN regulation at later stages of development. One such transgenic plant corresponding to CSN1 subunit, fus6/CSN1-3-4, accumulates wild-type level of CSN1 and displays normal plant architecture at vegetative stage. Here we show through histological analyses that fus6/CSN1-3-4 plants display impairment of pollen development at the bicellular stage. This defect is identical to that observed in RNAi plants of SAP130, encoding a subunit of the multiprotein splicing factor SF3b. We further dissected the previously reported interaction between CSN1 and SAP130, to reveal that approximately 100 amino-acid residues located at the N-terminal end of CSN1 (CSN1NN) were essential for this interaction. In silico structure modeling demonstrated that CSN1NN could swing out towards SAP130 to dock onto its Helical Insertion protruding from the structure. These results support our model that CSN1 embeds itself within CSN protein complex through its C-terminal half and reaches out to targets through its N-terminal portion of the protein. Taken together, this is the first report to document the identical loss-of-function phenotypes of CSN1 and SAP130 during male gametogenesis. Thus, we propose that SAP130 and CSN1 coordinately regulate development of male reproductive organs.

Indexed as

ArabidopsisArabidopsis ProteinsCOP9 Signalosome ComplexGametogenesisPlants, Genetically ModifiedArabidopsis ProteinsCOP9 Signalosome ComplexArabidopsisCSN1/GPS1Intrinsic disordered regionPollen developmentReproductionSPLICEOSOME ASSOCIATED PROTEIN 130 kDa (SAP130)/SF3b-3

Identifiers

PMID33555481
OpenAlexW3128856840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.