Evidence map›Paper›PMID 33555295›Full record

ArticleThe Journal of experimental medicine2021

The thymoproteasome hardwires the TCR repertoire of CD8+ T cells in the cortex independent of negative selection.

Izumi Ohigashi, Melina Frantzeskakis, Alison Jacques, Sayumi Fujimori, Aya Ushio, Fusano Yamashita, Naozumi Ishimaru, Da Yin, Margaret Cam, Michael C Kelly and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. The thymoproteasome in shaping the CD8Current opinion in immunology · 2023
    Review
  6. CD4Frontiers in immunology · 2023
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. The Role of Proteasomes in the Thymus.Frontiers in immunology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Izumi OhigashiDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Melina FrantzeskakisExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Alison JacquesExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Sayumi FujimoriDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Aya UshioExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Fusano YamashitaDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima, Japan.
Naozumi IshimaruDepartment of Oral Molecular Pathology, Tokushima University Graduate School of Biomedical Sciences, Tokushima, Japan.
Da YinCollaborative Bioinformatics Resource, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Margaret CamCollaborative Bioinformatics Resource, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Michael C KellySingle Cell Analysis Facility, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Parirokh AwasthiTransgenic Mouse Model Laboratory, Frederick National Laboratory for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD.
Kensuke TakadaLaboratory of Molecular Medicine, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Japan.
Yousuke TakahamaExperimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD.
National Institutes of Health · USTokushima University · JPHokkaido University · JP

Funding

Application of Flow Cytometry to Cell BiologyZICBC009255 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CROSSMAN, ASSIATU · 2009 to 2025
$26.4M
Thymus biologyZIABC011806 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TAKAHAMA, YOUSUKE · 2018 to 2025
$13.5M
6 · The paper itself

Abstract

The thymoproteasome expressed specifically in thymic cortical epithelium optimizes the generation of CD8+ T cells; however, how the thymoproteasome contributes to CD8+ T cell development is unclear. Here, we show that the thymoproteasome shapes the TCR repertoire directly in cortical thymocytes before migration to the thymic medulla. We further show that the thymoproteasome optimizes CD8+ T cell production independent of the thymic medulla; independent of additional antigen-presenting cells, including medullary thymic epithelial cells and dendritic cells; and independent of apoptosis-mediated negative selection. These results indicate that the thymoproteasome hardwires the TCR repertoire of CD8+ T cells with cortical positive selection independent of negative selection in the thymus.

Indexed as

AnimalsApoptosisBase SequenceCD8-Positive T-LymphocytesCell DifferentiationCells, CulturedDendritic CellsEpithelial CellsEpitheliumHigh-Throughput Nucleotide SequencingMiceMice, Inbred C57BLMice, KnockoutProteasome Endopeptidase ComplexReceptors, Antigen, T-Cell, alpha-betaSequence Analysis, RNAProteasome Endopeptidase ComplexReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID33555295
PMCPMC7873839
OpenAlexW3128888205

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.