Evidence map›Paper›PMID 33555055›Full record

ArticleThe EMBO journal2021

Transcription activation depends on the length of the RNA polymerase II C-terminal domain.

Anna Sawicka, Gabriel Villamil, Michael Lidschreiber, Xavier Darzacq, Claire Dugast-Darzacq, Björn Schwalb, Patrick Cramer

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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  12. Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Anna SawickaDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Gabriel VillamilDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID 0000-0001-6701-9505
Michael LidschreiberDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID 0000-0002-6740-2755
Xavier DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0003-2537-8395
Claire Dugast-DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Björn SchwalbDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Patrick CramerDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.ORCID 0000-0001-5454-7755
Max Planck Institute for Biophysical Chemistry · DEUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic RNA polymerase II (Pol II) contains a tail-like, intrinsically disordered carboxy-terminal domain (CTD) comprised of heptad-repeats, that functions in coordination of the transcription cycle and in coupling transcription to co-transcriptional processes. The CTD repeat number varies between species and generally increases with genome size, but the reasons for this are unclear. Here, we show that shortening the CTD in human cells to half of its length does not generally change pre-mRNA synthesis or processing in cells. However, CTD shortening decreases the duration of promoter-proximal Pol II pausing, alters transcription of putative enhancer elements, and delays transcription activation after stimulation of the MAP kinase pathway. We suggest that a long CTD is required for efficient enhancer-dependent recruitment of Pol II to target genes for their rapid activation.

Indexed as

Sequence DeletionTranscriptional ActivationEnhancer Elements, GeneticGene Expression ProfilingHumansMAP Kinase Signaling SystemPromoter Regions, GeneticProtein DomainsRNA Polymerase IIRNA Polymerase IIenhancergene expressionRNA polymerase IItranscription kinetics

Identifiers

PMID33555055
PMCPMC8090853
OpenAlexW3128894362

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.