Evidence map›Paper›PMID 33554856›Full record

ArticleeLife2021

SARS-CoV-2 S protein:ACE2 interaction reveals novel allosteric targets.

Palur V Raghuvamsi, Nikhil K Tulsian, Firdaus Samsudin, Xinlei Qian, Kiren Purushotorman, Gu Yue, Mary M Kozma, Wong Y Hwa, Julien Lescar, Peter J Bond and 2 more

Abstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

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  16. Isoform-specific C-terminal phosphorylation drives autoinhibition of Casein kinase 1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Advances in the Search for SARS-CoV-2 MPathogens (Basel, Switzerland) · 2024
    Review
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  19. Article
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Palur V Raghuvamsi *Department of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0002-0897-6935
Nikhil K Tulsian *Department of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-6577-6748
Firdaus SamsudinBioinformatics Institute, Agency for Science, Technology, and Research (A*STAR), Singapore, Singapore.
Xinlei QianLife Sciences Institute, Centre for Life Sciences, National University of Singapore, Singapore, Singapore.
Kiren PurushotormanLife Sciences Institute, Centre for Life Sciences, National University of Singapore, Singapore, Singapore.
Gu YueLife Sciences Institute, Centre for Life Sciences, National University of Singapore, Singapore, Singapore.
Mary M KozmaLife Sciences Institute, Centre for Life Sciences, National University of Singapore, Singapore, Singapore.
Wong Y HwaSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Julien LescarSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Peter J BondDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0003-2900-098X
Paul A MacAryLife Sciences Institute, Centre for Life Sciences, National University of Singapore, Singapore, Singapore.
Ganesh S AnandDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.ORCID 0000-0001-8995-3067

Funding

Ministry of Education - Singapore MOE2017-T2-A40-112Ministry of Education - Singapore Research FellowshipNational Medical Research Council WBS#R-571-000-081-213 Establishment of assays for drug screening and virus characterization of the newly emerged novel coronavirus (2019-nCoV) which is also known as the Wuhan coronavirus
6 · The paper itself

Abstract

The spike (S) protein is the main handle for SARS-CoV-2 to enter host cells via surface angiotensin-converting enzyme 2 (ACE2) receptors. How ACE2 binding activates proteolysis of S protein is unknown. Here, using amide hydrogen-deuterium exchange mass spectrometry and molecular dynamics simulations, we have mapped the S:ACE2 interaction interface and uncovered long-range allosteric propagation of ACE2 binding to sites necessary for host-mediated proteolysis of S protein, critical for viral host entry. Unexpectedly, ACE2 binding enhances dynamics at a distal S1/S2 cleavage site and flanking protease docking site ~27 Å away while dampening dynamics of the stalk hinge (central helix and heptad repeat [HR]) regions ~130 Å away. This highlights that the stalk and proteolysis sites of the S protein are dynamic hotspots in the prefusion state. Our findings provide a dynamics map of the S:ACE2 interface in solution and also offer mechanistic insights into how ACE2 binding is allosterically coupled to distal proteolytic processing sites and viral-host membrane fusion. Thus, protease docking sites flanking the S1/S2 cleavage site represent alternate allosteric hotspot targets for potential therapeutic development.

Indexed as

Allosteric SiteAmino Acid SequenceAngiotensin-Converting Enzyme 2Binding SitesCOVID-19HumansMass SpectrometryMolecular Dynamics SimulationProtein BindingProtein Processing, Post-TranslationalProteolysisReceptors, VirusSARS-CoV-2Spike Glycoprotein, CoronavirusVirus InternalizationACE2 protein, humanAngiotensin-Converting Enzyme 2Receptors, VirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ACE2allosterybiochemistrychemical biologyHDXMSmolecular biophysicsSARS-CoV-2spikestructural biologyvirus-host interactions

Identifiers

PMID33554856
PMCPMC7932696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.