Evidence map›Paper›PMID 33554062›Full record

ArticleiScience2021

Healthy cells functionally present TAP-independent SSR1 peptides: implications for selection of clinically relevant antigens.

Antonius A de Waard, Tamara Verkerk, Kelly Hoefakker, Dirk M van der Steen, Marlieke L M Jongsma, Dganit Melamed Kadosh, Sophie Bliss, Arnoud H de Ru, Arie Admon, Peter A van Veelen and 3 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Antonius A de WaardDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Tamara VerkerkDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Kelly HoefakkerDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Dirk M van der SteenDepartment of Hematology, LUMC, Leiden, ZA 2333, The Netherlands.
Marlieke L M JongsmaDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Dganit Melamed KadoshFaculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Sophie BlissDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Arnoud H de RuCenter for Proteomics and Metabolomics, LUMC, Leiden, ZA 2333, The Netherlands.
Arie AdmonFaculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Peter A van VeelenCenter for Proteomics and Metabolomics, LUMC, Leiden, ZA 2333, The Netherlands.
Marieke GriffioenDepartment of Hematology, LUMC, Leiden, ZA 2333, The Netherlands.
Mirjam H M HeemskerkDepartment of Hematology, LUMC, Leiden, ZA 2333, The Netherlands.
Robbert M SpaapenDepartment of Immunopathology, Sanquin Research, Amsterdam, CX 1066, The Netherlands.
Sanquin · NLLeiden University Medical Center · NLNetherlands Metabolomics Centre · NLTechnion – Israel Institute of Technology · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tumors with an impaired transporter associated with antigen processing (TAP) present several endoplasmic reticulum-derived self-antigens on HLA class I (HLA-I) which are absent on healthy cells. Selection of such TAP-independent antigens for T cell-based immunotherapy should include analysis of their expression on healthy cells to prevent therapy-induced adverse toxicities. However, it is unknown how the absence of clinically relevant antigens on healthy cells needs to be validated. Here, we monitored TAP-independent antigen presentation on various healthy cells after establishing a T cell tool recognizing a TAP-independent signal sequence receptor 1-derived antigen. We found that most but not all healthy cells present this antigen under normal and inflammatory conditions, indicating that TAP-independent antigen presentation is a variable phenomenon. Our data emphasize the necessity of extensive testing of a wide variety of healthy cell types to define clinically relevant TAP-independent antigens that can be safely targeted by immunotherapy.

Indexed as

CancerImmunology

Identifiers

PMID33554062
PMCPMC7847959
OpenAlexW3120408667

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.