Evidence map›Paper›PMID 33553958›Full record

ArticleACS omega2021

Stress-Induced Detoxification Enzymes in Rice Have Broad Substrate Affinity.

Vidya Niranjan, Akshay Uttarkar, Sujitha Dadi, Akashata Dawane, Ashwin Vargheese, Jalendra Kumar H G, Udayakumar Makarla, Vemanna S Ramu

Open access · goldAbstract read
In one paragraph

Article in ACS omega, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Prolongation of seed viability and grain quality in rice by editingMolecular breeding : new strategies in plant improvement · 2024
    Article
  4. Review
  5. Article
  6. Quantitative Proteome Profiling of aFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vidya NiranjanDepartment of Biotechnology, R.V. Engineering College, Bengaluru 560059, India.
Akshay UttarkarDepartment of Biotechnology, R.V. Engineering College, Bengaluru 560059, India.
Sujitha DadiDepartment of Crop Physiology, University of Agriculture Sciences, GKVK, Bengaluru 560065, India.
Akashata DawaneLaboratory of Plant Functional Genomics, Regional Center for Biotechnology, 3 Milestone Faridabad-Gurugram Expressway, NCR Biotech Science Cluster, Faridabad, Haryana 121001, India.
Ashwin VargheeseDepartment of Crop Physiology, University of Agriculture Sciences, GKVK, Bengaluru 560065, India.
Jalendra Kumar H GDepartment of Crop Physiology, University of Agriculture Sciences, GKVK, Bengaluru 560065, India.
Udayakumar MakarlaDepartment of Crop Physiology, University of Agriculture Sciences, GKVK, Bengaluru 560065, India.
Vemanna S RamuLaboratory of Plant Functional Genomics, Regional Center for Biotechnology, 3 Milestone Faridabad-Gurugram Expressway, NCR Biotech Science Cluster, Faridabad, Haryana 121001, India.
University of Agricultural Sciences, Bangalore · INRegional Centre for Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive carbonyl compounds (RCCs) such as hydroxynonenol, malondialdehyde, acrolein, crotonaldehyde, methylglyoxal, and glyoxal accumulate at higher levels under stress in plants and damage the cell metabolic activities. Plants have evolved several detoxifying enzymes such as aldo-keto reductases (AKRs), aldehyde/alcohol dehydrogenases (ALDH/ADH), and glyoxalases. We report the phylogenetic relationship of these proteins and in silico analysis of rice-detoxifying protein structures and their substrate affinity with cofactors using docking and molecular simulation studies. Molecular simulations with nicotinamide adenine dinucleotide phosphate or glutathione cofactor docking with commonly known reactive substrates suggests that the AKRs, ALDH, and ADH proteins attain maximum conformational changes, whereas glyoxalase has fewer conformational changes with cofactor binding. Several AKRs showed a significant binding affinity with many RCCs. The rice microarray studies showed enhanced expression of many AKRs in resistant genotypes, which also showed higher affinity to RCCs, signifying their importance in managing carbonyl stress. The higher expression of AKRs is regulated by stress-responsive transcription factors (TFs) as we identified stress-specific

Identifiers

PMID33553958
PMCPMC7860239
OpenAlexW3121136191

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.