Evidence map›Paper›PMID 33550681›Full record

ReviewProtein science : a publication of the Protein Society2021

Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Zhen-Lu Li, Matthias Buck

Open access · bronzeAbstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact, top 100% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 0 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Zhen-Lu LiDepartment of Physiology and Biophysics, Case Western Reserve University, School of Medicine, Cleveland, Ohio, USA.ORCID 0000-0003-2101-8237
Matthias BuckDepartment of Physiology and Biophysics, Case Western Reserve University, School of Medicine, Cleveland, Ohio, USA.ORCID 0000-0002-2958-0403
University School · US

Funding

Structure and function of plexin - co-receptor interactionsR01EY029169 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2018 to 2021
$2.1M
Signaling Biophysics of Protein-GTPase InteractionsR01GM073071 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2005 to 2009
$1.4M
Structure-Dynamics Relationships in Proteins: A multi-faceted characterizatiR01GM092851 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2010 to 2013
$1.2M
NEI NIH HHS R01 EY029169NIGMS NIH HHS R01 GM073071NIGMS NIH HHS R01 GM092851
6 · The paper itself

Abstract

Of the roughly 20,000 canonical human protein sequences, as of January 20, 2021, 7,077 proteins have had their full or partial, medium- to high-resolution structures determined by x-ray crystallography or other methods. Which of these proteins dominate the protein data bank (the PDB) and why? In this paper, we list the 273 top human protein structures based on the number of their PDB entries. This set of proteins accounts for more than 40% of all available human PDB entries and represent past trends as well as current status for protein structural biology. We briefly discuss the relationship which some of the prominent protein structures have with protein research as a whole and mention their relevance to human diseases. The top-10 soluble and membrane proteins are all well-known (most of their first structures being deposited more than 30 years ago). Overall, there is no dramatic change in recent trends in the PDB. Remarkably, the number of structure depositions has grown nearly exponentially over the last 10 or more years (with a doubling time of 7 years for proteins, obtained from any organism). Growth in human protein structures is slightly faster (at 5.9 years). The information in this paper may be informative to senior scientists but also inspire researchers who are new to protein science, providing the year 2021 snap-shot for the state of protein structural biology.

Indexed as

AlgorithmsComputational BiologyDatabases, ProteinModels, MolecularCrystallography, X-RayHumansMembrane ProteinsProtein ConformationMembrane Proteinscancerhuman diseasehuman membrane proteinsprotein kinaseprotein structures of model organismsstructural biology

Identifiers

PMID33550681
PMCPMC7980527
OpenAlexW3093468851

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.