Evidence map›Paper›PMID 33550613›Full record

ArticleProteins2021

Oxidation shuts down an auto-inhibitory mechanism of von Willebrand factor.

Rachel Tsai, Gianluca Interlandi

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cysteine and methionine oxidation in thrombotic disorders.Current opinion in chemical biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Rachel TsaiDepartment of Bioengineering, University of Washington, Seattle, Washington, USA.
Gianluca InterlandiDepartment of Bioengineering, University of Washington, Seattle, Washington, USA.ORCID 0000-0001-5445-9587
University of Washington · US

Funding

Structural analysis of oxidation effects on the hemostatic processK25HL118137 · NHLBI · UNIVERSITY OF WASHINGTON · PI INTERLANDI, GIANLUCA · 2013 to 2017
$695k
NHLBI NIH HHS K25 HL118137
6 · The paper itself

Abstract

The blood protein von Willebrand factor (VWF) is a key link between inflammation and pathological thrombus formation. In particular, oxidation of methionine residues in specific domains of VWF due to the release of oxidants in inflammatory conditions has been linked to an increased platelet-binding activity. However, the atomistic details of how methionine oxidation activates VWF have not been elucidated to date. Yet understanding the activation mechanism of VWF under oxidizing conditions can lead to the development of novel therapeutics that target VWF selectively under inflammatory conditions in order to reduce its thrombotic activity while maintaining its haemostatic function. In this manuscript, we used a combination of a dynamic flow assay and molecular dynamics (MD) simulations to investigate how methionine oxidation removes an auto-inhibitory mechanism of VWF. Results from the dynamic flow assay revealed that oxidation does not directly activate the A1 domain, which is the domain in VWF that contains the binding site to the platelet surface receptor glycoprotein Ibα (GpIbα), but rather removes the inhibitory function of the neighboring A2 and A3 domains. Furthermore, the MD simulations combined with free energy perturbation calculations suggested that methionine oxidation may destabilize the binding interface between the A1 and A2 domains leading to unmasking of the GpIbα-binding site in the A1 domain.

Indexed as

AnimalsBinding SitesBlood PlateletsCHO CellsCricetulusGene ExpressionHemostasisHumansInflammationKineticsMethionineMolecular Dynamics SimulationOxidation-ReductionPlatelet Glycoprotein GPIb-IX ComplexProtein BindingProtein Conformation, alpha-HelicalMethioninePlatelet Glycoprotein GPIb-IX Complexvon Willebrand Factordomain inhibitiondynamic flow assayfree energy perturbationhaemostatis and thrombosisinflammationmethionine oxidationmolecular dynamics simulationsprotein-protein interaction

Identifiers

PMID33550613
PMCPMC8089038
OpenAlexW3128649893

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.