Evidence map›Paper›PMID 33548202›Full record

ArticleMolecular cell2021

Stress-induced nuclear condensation of NELF drives transcriptional downregulation.

Prashant Rawat, Marc Boehning, Barbara Hummel, Fernando Aprile-Garcia, Anwit S Pandit, Nathalie Eisenhardt, Ashkan Khavaran, Einari Niskanen, Seychelle M Vos, Jorma J Palvimo and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 131 citations in OpenAlex.

  1. Article
  2. Article
  3. Current Challenges of Transcription Compartmentalization Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Small heat shock proteins and biomolecular condensates.Cellular and molecular life sciences : CMLS · 2026
    Review
  5. Review
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  7. Article
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  14. Article
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  17. Transcription regulation by biomolecular condensates.Nature reviews. Molecular cell biology · 2025
    Review
  18. Article
  19. Article
  20. Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Prashant RawatMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Biology, University of Freiburg, Freiburg, Germany; International Max Planck Research School for Molecular and Cellular Biology (IMPRS-MCB), Freiburg, Germany. Electronic address: rawat@ie-freiburg.mpg.de.
Marc BoehningDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Barbara HummelMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.
Fernando Aprile-GarciaMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.
Anwit S PanditMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; CIBSS, Centre for Integrative Biological Signaling Studies, Freiburg, Germany; Spemann Graduate School of Biology and Medicine, Albert Ludwigs University of Freiburg, Freiburg, Germany.
Nathalie EisenhardtDepartment of Epigenetics, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.
Ashkan KhavaranMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Einari NiskanenInstitute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Seychelle M VosDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Jorma J PalvimoInstitute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Andrea PichlerDepartment of Epigenetics, Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany.
Patrick CramerDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Electronic address: patrick.cramer@mpibpc.mpg.de.
Ritwick SawarkarMax Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany; CIBSS, Centre for Integrative Biological Signaling Studies, Freiburg, Germany; MRC, University of Cambridge, Cambridge, UK. Electronic address: rs2099@cam.ac.uk.
Max Planck Institute of Immunobiology and Epigenetics · DEUniversity of Freiburg · DEMax Planck Institute for Biophysical Chemistry · DEUniversity of Eastern Finland · FI

Funding

Medical Research Council MC_UU_00025/8
6 · The paper itself

Abstract

In response to stress, human cells coordinately downregulate transcription and translation of housekeeping genes. To downregulate transcription, the negative elongation factor (NELF) is recruited to gene promoters impairing RNA polymerase II elongation. Here we report that NELF rapidly forms nuclear condensates upon stress in human cells. Condensate formation requires NELF dephosphorylation and SUMOylation induced by stress. The intrinsically disordered region (IDR) in NELFA is necessary for nuclear NELF condensation and can be functionally replaced by the IDR of FUS or EWSR1 protein. We find that biomolecular condensation facilitates enhanced recruitment of NELF to promoters upon stress to drive transcriptional downregulation. Importantly, NELF condensation is required for cellular viability under stressful conditions. We propose that stress-induced NELF condensates reported here are nuclear counterparts of cytosolic stress granules. These two stress-inducible condensates may drive the coordinated downregulation of transcription and translation, likely forming a critical node of the stress survival strategy.

Indexed as

Protein Processing, Post-TranslationalTranscription, GeneticAminoacyltransferasesChromatinClone CellsCyclin-Dependent Kinase 9Genes, ReporterHeat-Shock ResponseHEK293 CellsHeLa CellsHumansIntrinsically Disordered ProteinsLuminescent ProteinsPhosphorylationPositive Transcriptional Elongation Factor BPromoter Regions, GeneticAminoacyltransferasesCDK9 protein, humanChromatinCyclin-Dependent Kinase 9Intrinsically Disordered ProteinsLuminescent ProteinsNELFA protein, humanPositive Transcriptional Elongation Factor BRed Fluorescent ProteinRNA Polymerase IITranscriptional Elongation FactorsTranscription FactorsZNF451 protein, humanCDK9heat shocknegative elongation factor (NELF)pausingphase separationproteostasisRNA polymerase IISUMOtranscriptional condensatestranscriptional stress response

Identifiers

PMID33548202
PMCPMC7939545
OpenAlexW3127787514

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.