Evidence map›Paper›PMID 33547931›Full record

ArticlePlant cell reports2021

Inactivation of the β (1, 2)-xylosyltransferase and the α (1, 3)-fucosyltransferase gene in rice (Oryza sativa) by multiplex CRISPR/Cas9 strategy.

Jae-Wan Jung, Jun-Hye Shin, Won-Kyung Lee, Hilal Begum, Chan-Hong Min, Mi-Hwa Jang, Han-Bin Oh, Moon-Sik Yang, Seong-Ryong Kim

Abstract read
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In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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  13. CRISPR innovations in plant breeding.Plant cell reports · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jae-Wan Jung *Department of Molecular Biology, Chonbuk National University, Jeonju, Jeollabuk-do, 561-756, Republic of Korea.
Jun-Hye Shin *Department of Life Science, Sogang University, Seoul, Republic of Korea.
Won-Kyung LeeDepartment of Life Science, Sogang University, Seoul, Republic of Korea.
Hilal BegumDepartment of Life Science, Sogang University, Seoul, Republic of Korea.
Chan-Hong MinDepartment of Chemistry, Sogang University, Seoul, Republic of Korea.
Mi-Hwa JangDepartment of Life Science, Sogang University, Seoul, Republic of Korea.
Han-Bin OhDepartment of Chemistry, Sogang University, Seoul, Republic of Korea.
Moon-Sik YangDepartment of Molecular Biology, Chonbuk National University, Jeonju, Jeollabuk-do, 561-756, Republic of Korea.
Seong-Ryong KimDepartment of Life Science, Sogang University, Seoul, Republic of Korea. sungkim@sogang.ac.kr.ORCID http://orcid.org/0000-0003-4901-7260
Sogang University · KRJeonbuk National University · KRJohn Innes Centre · GB

Funding

Ministry of Agriculture, Food and Rural Affairs 714001-7National Academy of Agricultural Science PJ013659National research Foundation of Korea (NRF) grant funded by the Korea government (MEST) (KR) 2020R1A2C1014133the National Research Foundation of Korea (NRF) funded by the Ministry of Education NRF-2018R1A6A3A01011033
6 · The paper itself

Abstract

key messageCRISPR/Cas9-mediated OsXylT and OsFucT mutation caused the elimination of plant-specific β1,2-xylose and α1,3-fucose residues on glycoproteins in rice, which is the first report of OsXylT/OsFucT double KO mutation in rice. N-glycosylation pathway is the one of post-translational mechanism and is known as highly conserved in eukaryotes. However, the process for complex-N-glycan modification is different between mammals and plants. In plant-specific manner, β1,2-xylose and α1,3-fucose residues are transferred to N-glycan core structure on glycoproteins by β1,2-xylosyltransferase (β1,2-XylT) and α1,3-fucosyltransferase (α1,3-FucT), respectively. As an effort to use plants as a platform to produce biopharmaceuticals, the plant-specific N-glycan genes of rice (Oryza sativa), β1,2-xylT (OsXylT) and α1,3-FucT (OsFucT), were knocked out using multiplex CRISPR/Cas9 technology. The double knock-out lines were found to have frameshift mutations by INDELs. Both β1,2-xylose and α1,3-fucose residues in the lines were not detected in Western blot analysis. Consistently, there was no peak corresponding to the N-glycans in MALDI-TOF/MS analysis. Although α1,3-fucose and β1,2-xylose residues were not detected in the line, other plant-specific residues of β1,3-galactose and α1,4-fucose were detected. Thus, we suggest that each enzymes working on the process for complex N-glycan biosynthesis might independently act in rice, hence the double knock-out of both OsXylT and OsFucT might be not enough to humanize N-glycan structure in rice.

Indexed as

CRISPR-Cas SystemsEpitopesFucosyltransferasesGene EditingGene SilencingMutationOryzaPentosyltransferasesPlant ProteinsPlants, Genetically ModifiedPolysaccharidesUDP Xylose-Protein XylosyltransferaseEpitopesFucosyltransferasesgalactoside 3-fucosyltransferasePentosyltransferasesPlant ProteinsPolysaccharidesUDP Xylose-Protein XylosyltransferaseLewis-a-epitopeN-glycosylationPlant specific N-glycanRiceα1,3-fucosyltransferaseβ1,2-xylosyltransferase

Identifiers

PMID33547931
OpenAlexW3127431640

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.