Evidence map›Paper›PMID 33547076›Full record

ArticleScience advances2021

Targeting oncoproteins with a positive selection assay for protein degraders.

Vidyasagar Koduri, Leslie Duplaquet, Benjamin L Lampson, Adam C Wang, Amin H Sabet, Mette Ishoey, Joshiawa Paulk, Mingxing Teng, Isaac S Harris, Jennifer E Endress and 16 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Positive selection screen identifies natural product β-catenin inactivators.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Oncogenic Gα signaling requires AP-3-dependent recruitment to the endolysosomal compartment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Ratiometric transcriptional activation by protein degradation.bioRxiv : the preprint server for biology · 2026
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  11. Total loss ofProceedings of the National Academy of Sciences of the United States of America · 2024
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  18. USP13 promotes deubiquitination of ZHX2 and tumorigenesis in kidney cancer.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 1 country.

Vidyasagar KoduriDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-9700-8169
Leslie DuplaquetDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-6544-0432
Benjamin L LampsonDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-6033-3363
Adam C WangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-7093-2984
Amin H SabetDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Mette IshoeyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Joshiawa PaulkDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-6134-1840
Mingxing TengDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0001-6574-1764
Isaac S HarrisLudwig Cancer Center, Boston, MA 02115, USA.ORCID 0000-0002-6855-2763
Jennifer E EndressLudwig Cancer Center, Boston, MA 02115, USA.ORCID 0000-0002-7538-6302
Xiaoxi LiuDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Ethan DasilvaDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-4291-413X
Kimberly J BriggsDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-3707-9889
Christopher J OttDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0001-6142-7241
Tinghu ZhangDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Katherine A DonovanDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-8539-5106
Eric S FischerDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0001-7337-6306
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7626-0034
Nathanael S GrayDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0001-5354-7403
James BradnerNovartis Institutes for Biomedical Research, Cambridge, MA 02139, USA.ORCID 0000-0003-1422-5318
Jeffrey A MedinDepartments of Pediatrics and Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA.ORCID 0000-0001-8165-8995
Sara J BuhrlageDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Matthew G OserDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA. moser@partners.org william_kaelin@dfci.harvard.edu.ORCID 0000-0003-2047-0969
William G KaelinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA. moser@partners.org william_kaelin@dfci.harvard.edu.ORCID 0000-0002-0574-4856
Dana-Farber Cancer Institute · USHarvard University · USBrigham and Women's Hospital · USBroad Institute · USMedical College of Wisconsin · USNovartis (United States) · US

Funding

Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
The von Hippel-Lindau Tumor Suppressor Gene and Kidney Cancer: Insights into Oxygen Sensing and Treating Cancers Caused by Undruggable MutationsR35CA210068 · NCI · DANA-FARBER CANCER INST · PI WILLIAM G. KAELIN · 2016 to 2026
$10.8M
New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
The molecular basis of IMiD induced neo-substrate recruitment to the CRL4CRBN ubiquitin E3 ligase.R01CA214608 · NCI · DANA-FARBER CANCER INST · PI Eric Sebastian Fischer · 2017 to 2026
$4.0M
Advancing Multiplexed Isobaric Tag-based Strategies for Proteome ProfilingR01GM132129 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2019 to 2023
$1.7M
Mechanism of Action of Spautin-1, A Novel Degrader of IKZF1K08CA252611 · NCI · DANA-FARBER CANCER INST · PI KODURI, VIDYASAGAR · 2020 to 2024
$1.1M
New Therapeutic Targets in Small Cell Lung Cancer that are Epistatic or Synthetic Lethal with pRB LossK08CA222657 · NCI · DANA-FARBER CANCER INST · PI OSER, MATTHEW GILBERT · 2017 to 2021
$886k
Chemical Modulation of Chromatin Signaling in Lymphoid MalignanciesR00CA190861 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI OTT, CHRISTOPHER J · 2017 to 2019
$737k
NCI NIH HHS K08 CA222657NCI NIH HHS K08 CA252611NCI NIH HHS R00 CA190861NCI NIH HHS R01 CA214608NCI NIH HHS R35 CA210068NCI NIH HHS T32 CA009172NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R01 GM132129
6 · The paper itself

Abstract

Most intracellular proteins lack hydrophobic pockets suitable for altering their function with drug-like small molecules. Recent studies indicate that some undruggable proteins can be targeted by compounds that can degrade them. For example, thalidomide-like drugs (IMiDs) degrade the critical multiple myeloma transcription factors IKZF1 and IKZF3 by recruiting them to the cereblon E3 ubiquitin ligase. Current loss of signal ("down") assays for identifying degraders often exhibit poor signal-to-noise ratios, narrow dynamic ranges, and false positives from compounds that nonspecifically suppress transcription or translation. Here, we describe a gain of signal ("up") assay for degraders. In arrayed chemical screens, we identified novel IMiD-like IKZF1 degraders and Spautin-1, which, unlike the IMiDs, degrades IKZF1 in a cereblon-independent manner. In a pooled CRISPR-Cas9-based screen, we found that CDK2 regulates the abundance of the ASCL1 oncogenic transcription factor. This methodology should facilitate the identification of drugs that directly or indirectly degrade undruggable proteins.

Indexed as

Oncogene ProteinsProteolysisAdaptor Proteins, Signal TransducingBasic Helix-Loop-Helix ProteinsBenzylaminesCRISPR-Cas SystemsHumansIkaros Transcription FactorQuinazolinesThalidomideTranscription FactorsAdaptor Proteins, Signal TransducingASCL1 protein, humanBasic Helix-Loop-Helix ProteinsBenzylaminesIkaros Transcription FactorIKZF1 protein, humanOncogene ProteinsQuinazolinesspautin-1ThalidomideTranscription Factors

Identifiers

PMID33547076
PMCPMC7864573
OpenAlexW3126312907

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.