Evidence map›Paper›PMID 33544410›Full record

ArticleJournal of cellular and molecular medicine2021

Identification of novel dysregulated circular RNAs in early-stage breast cancer.

Arunagiri Kuha Deva Magendhra Rao, Vittal Rangan Arvinden, Deepa Ramasamy, Krishna Patel, Balaiah Meenakumari, Priya Ramanathan, Shirley Sundersingh, Velusami Sridevi, Thangarajan Rajkumar, Zdenko Herceg and 2 more

Open access · goldAbstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Dual effects of circRNA in thyroid and breast cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Arunagiri Kuha Deva Magendhra RaoDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Vittal Rangan ArvindenDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Deepa RamasamyDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Krishna PatelInstitute of Bioinformatics, ITPL, Bangalore, India.
Balaiah MeenakumariDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Priya RamanathanDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Shirley SundersinghDepartment of Oncopathology, Cancer Institute (WIA), Chennai, India.
Velusami SrideviDepartment of Surgical Oncology, Cancer Institute (WIA), Chennai, India.
Thangarajan RajkumarDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.
Zdenko HercegEpigenetics Group, International Agency for Research on Cancer (IARC), Lyon, France.
Harsha GowdaInstitute of Bioinformatics, ITPL, Bangalore, India.
Samson ManiDepartment of Molecular Oncology, Cancer Institute (WIA), Chennai, India.ORCID 0000-0001-8650-7432
Cancer Institute (WIA) · INCentre international de recherche sur le cancer · FRInstitute of Bioinformatics · INManipal Academy of Higher Education · IN

Funding

World Health Organization 001
6 · The paper itself

Abstract

Breast cancer is a major cause of cancer-related death in women worldwide. Non-coding RNAs are a potential resource to be used as an early diagnostic biomarker for breast cancer. Circular RNAs are a recently identified group of non-coding RNA with a significant role in disease development with potential utility in diagnosis/prognosis in cancer. In this study, we identified 26 differentially expressed circular RNAs associated with early-stage breast cancer. RNA sequencing and two circRNA detection tools (find_circ and DCC) were used to understand the circRNA expression signature in breast cancer. We identified hsa_circ_0006743 (circJMJD1C) and hsa_circ_0002496 (circAPPBP1) to be significantly up-regulated in early-stage breast cancer tissues. Co-expression analysis identified four pairs of circRNA-miRNA (hsa_circ_0023990 : hsa-miR-548b-3p, hsa_circ_0016601 : hsa_miR-1246, hsa_circ_0001946 : hsa-miR-1299 and hsa_circ_0000117:hsa-miR-502-5p) having potential interaction. The miRNA target prediction and network analysis revealed mRNA possibly regulated by circRNAs. We have thus identified circRNAs of diagnostic implications in breast cancer and also observed circRNA-miRNA interaction which could be involved in breast cancer development.

Indexed as

Gene Expression Regulation, NeoplasticBiomarkers, TumorBreast NeoplasmsFemaleHumansMicroRNAsPrognosisRNA, CircularRNA, MessengerSequence Analysis, RNASurvival RateBiomarkers, TumorMicroRNAsRNA, CircularRNA, Messengerbreast cancercircRNA as microRNA precursorcircRNA-microRNA interactioncircular RNAnon-coding RNA

Identifiers

PMID33544410
PMCPMC8051735
OpenAlexW3127021593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.