Evidence map›Paper›PMID 33544231›Full record

ArticlePlanta2021

Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers.

Ting Ngoot-Chin, Muhammad Azwan Zulkifli, Eric van de Weg, Noorhariza Mohd Zaki, Norhalida Mohamed Serdari, Suzana Mustaffa, Mohd Isa Zainol Abidin, Nik Shazana Nik Mohd Sanusi, Marinus J M Smulders, Eng Ti Leslie Low and 2 more

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Article in Planta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. High-resolution genetic linkage map and height-related QTLs in an oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  2. Article
  3. Frontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ting Ngoot-Chin *Malaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Muhammad Azwan Zulkifli *Malaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Eric van de WegPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Noorhariza Mohd ZakiMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Norhalida Mohamed SerdariMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Suzana MustaffaMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Mohd Isa Zainol AbidinPlant Breeding and Services Department, KULIM Plantations Berhad, 81900, Kota Tinggi, Johor, Malaysia.
Nik Shazana Nik Mohd SanusiMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Marinus J M SmuldersPlant Breeding, Wageningen University and Research, Wageningen, The Netherlands.
Eng Ti Leslie LowMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Maizura IthninMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.
Rajinder SinghMalaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia. rajinder@mpob.gov.my.ORCID http://orcid.org/0000-0001-9933-4884

Funding

Malaysian Palm Oil Board ABBC23-2019
6 · The paper itself

Abstract

MAIN

conclusionKaryotyping using high-density genome-wide SNP markers identified various chromosomal aberrations in oil palm (Elaeis guineensis Jacq.) with supporting evidence from the 2C DNA content measurements (determined using FCM) and chromosome counts. Oil palm produces a quarter of the world's total vegetable oil. In line with its global importance, an initiative to sequence the oil palm genome was carried out successfully, producing huge amounts of sequence information, allowing SNP discovery. High-capacity SNP genotyping platforms have been widely used for marker-trait association studies in oil palm. Besides genotyping, a SNP array is also an attractive tool for understanding aberrations in chromosome inheritance. Exploiting this, the present study utilized chromosome-wide SNP allelic distributions to determine the ploidy composition of over 1,000 oil palms from a commercial F

Indexed as

ArecaceaeChromosome AberrationsMicrosatellite RepeatsPloidiesChromosome MappingChromosomes, PlantHigh-Throughput Nucleotide SequencingReproducibility of ResultsAneuploidChromosomeElaeis guineensis Jacq.Molecular karyotypingSNP arrayTriploid

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.