Evidence map›Paper›PMID 33543005›Full record

ArticleMatrix biology plus2019

Allysine modifications perturb tropoelastin structure and mobility on a local and global scale.

Jazmin Ozsvar, Anna Tarakanova, Richard Wang, Markus J Buehler, Anthony S Weiss

Open access · goldAbstract read
In one paragraph

Article in Matrix biology plus, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Tropoelastin and Elastin Assembly.Frontiers in bioengineering and biotechnology · 2021
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jazmin OzsvarCharles Perkins Centre, the University of Sydney, 2006 Sydney, NSW, Australia.
Anna TarakanovaLaboratory for Atomistic and Molecular Mechanics (LAMM), Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Richard WangCharles Perkins Centre, the University of Sydney, 2006 Sydney, NSW, Australia.
Markus J BuehlerLaboratory for Atomistic and Molecular Mechanics (LAMM), Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Anthony S WeissCharles Perkins Centre, the University of Sydney, 2006 Sydney, NSW, Australia.
The University of Sydney · AUMassachusetts Institute of Technology · US

Funding

Models to Predict Protein Biomaterial PerformanceU01EB014976 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI BUEHLER, MARKUS J., KAPLAN, DAVID L. · 2012 to 2020
$5.2M
NIBIB NIH HHS U01 EB014976
6 · The paper itself

Abstract

Elastin provides elastic tissues with resilience through stretch and recoil cycles, and is primarily made of its extensively cross-linked monomer, tropoelastin. Here, we leverage the recently published full atomistic model of tropoelastin to assess how allysine modifications, which are essential to cross-linking, contribute to the dynamics and structural changes that occur in tropoelastin in the context of elastin assembly. We used replica exchange molecular dynamics to generate structural ensembles of allysine containing tropoelastin. We conducted principal component analysis on these ensembles and found that the molecule departs from the canonical structural ensemble. Furthermore, we showed that, while the canonical scissors-twist movement was retained, new movements emerged that deviated from those of the wild type protein, providing evidence for the involvement of a variety of molecular motions in elastin assembly. Additionally, we highlighted secondary structural changes and linked these perturbations to the longevity of specific salt bridges. We propose a model where allysines in tropoelastin contribute to hierarchical elastin assembly through global and local perturbations to molecular structure and dynamics.

Indexed as

5ALK, tropoelastin containing 5 allysine residuesALK353, tropoelastin containing allysine at residue 353ALK353, tropoelastin containing allysine at residue 507ALL, allysine aldolANM, anisotropic network modelAssemblyECM, extracellular matrixElastinLNL, lysinonorleucineMD, molecular dynamicsMolecular dynamicsNMA, normal mode analysisPCA, principal component analysisREMD, replica exchange molecular dynamicsReplica exchange molecular dynamicsRMSD, root mean square deviationSASA, solvent accessible surface areaWT, wild type tropoelastin

Identifiers

PMID33543005
PMCPMC7852328
OpenAlexW2924836990

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.