Evidence map›Paper›PMID 33542339›Full record

ArticleScientific reports2021

Genome-wide characterization of the hyperaccumulator Sedum alfredii F-box family under cadmium stress.

Zhuang Zhang, Wenmin Qiu, Wen Liu, Xiaojiao Han, Longhua Wu, Miao Yu, Xuelong Qiu, Zhengquan He, HaiYing Li, Renying Zhuo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genome-Wide Characterization ofPlants (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Zhuang Zhang *Key Laboratory of Three Gorges Regional Plant Genetic and Germplasm Enhancement (CTGU)/Biotechnology Research Center, China Three Gorges University, Yichang, 443002, Hubei, China.
Wenmin Qiu *State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China.
Wen LiuKey Laboratory of Three Gorges Regional Plant Genetic and Germplasm Enhancement (CTGU)/Biotechnology Research Center, China Three Gorges University, Yichang, 443002, Hubei, China.
Xiaojiao HanState Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China.
Longhua WuKey Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
Miao YuState Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China.
Xuelong QiuAgricultural Technology Extension Center of Fuyang District, Hangzhou, Zhejiang, China.
Zhengquan HeKey Laboratory of Three Gorges Regional Plant Genetic and Germplasm Enhancement (CTGU)/Biotechnology Research Center, China Three Gorges University, Yichang, 443002, Hubei, China. zhq_he@163.com.
HaiYing LiInstitute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China. lihaiying_2004@163.com.
Renying ZhuoState Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China. zhuory@gmail.com.
Chinese Academy of Forestry · CNChina Three Gorges University · CNInstitute of Soil Science · CNZheJiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The F-box genes, which form one of the largest gene families in plants, are vital for plant growth, development and stress response. However, F-box gene family in Sedum alfredii remains unknown. Comprehensive studies addressing their function responding to cadmium stress is still limited. In the present study, 193 members of the F-box gene (SaFbox) family were identified, which were classified into nine subfamilies. Most of the SaFboxs had highly conserved domain and motif. Various functionally related cis-elements involved in plant growth regulation, stress and hormone responses were located in the upstream regions of SaFbox genes. RNA-sequencing and co-expression network analysis revealed that the identified SaFbox genes would be involved in Cd stress. Expression analysis of 16 hub genes confirmed their transcription level in different tissues. Four hub genes (SaFbox40, SaFbox51, SaFbox136 and SaFbox170) were heterologously expressed in a Cd-sensitive yeast cell to assess their effects on Cd tolerance. The transgenic yeast cells carrying SaFbox40, SaFbox51, SaFbox136, or SaFbox170 were more sensitive and accumulated more cadmium under Cd stress than empty vector transformed control cells. Our results performed a comprehensive analysis of Fboxs in S. alfredii and identified their potential roles in Cd stress response.

Indexed as

Biodegradation, EnvironmentalCadmiumF-Box ProteinsGene Expression Regulation, PlantPlant ProteinsSedumSoil PollutantsStress, PhysiologicalTranscriptomeCadmiumF-Box ProteinsPlant ProteinsSoil Pollutants

Identifiers

PMID33542339
PMCPMC7862640
OpenAlexW3127219356

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.