Evidence map›Paper›PMID 33542322›Full record

ArticleScientific reports2021

Histone modifications form a cell-type-specific chromosomal bar code that persists through the cell cycle.

John A Halsall, Simon Andrews, Felix Krueger, Charlotte E Rutledge, Gabriella Ficz, Wolf Reik, Bryan M Turner

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Genome folding dynamics during the M-to-G1-phase transition.Current opinion in genetics & development · 2023
    Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

John A HalsallChromatin and Gene Regulation Group, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK. j.halsall@bham.ac.uk.
Simon AndrewsBioinformatics, The Babraham Institute, Cambridge, UK.
Felix KruegerBioinformatics, The Babraham Institute, Cambridge, UK.
Charlotte E RutledgeChromatin and Gene Regulation Group, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Gabriella FiczBarts Cancer Institute, Queen Mary University of London, London, UK.
Wolf ReikEpigenetics Programme, The Babraham Institute, Cambridge, UK.
Bryan M TurnerChromatin and Gene Regulation Group, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, B15 2TT, UK. b.m.turner@bham.ac.uk.
Babraham Institute · GBUniversity of Birmingham · GBQueen Mary University of London · GB

Funding

Cancer Research UK C1015/A13794
6 · The paper itself

Abstract

Chromatin configuration influences gene expression in eukaryotes at multiple levels, from individual nucleosomes to chromatin domains several Mb long. Post-translational modifications (PTM) of core histones seem to be involved in chromatin structural transitions, but how remains unclear. To explore this, we used ChIP-seq and two cell types, HeLa and lymphoblastoid (LCL), to define how changes in chromatin packaging through the cell cycle influence the distributions of three transcription-associated histone modifications, H3K9ac, H3K4me3 and H3K27me3. We show that chromosome regions (bands) of 10-50 Mb, detectable by immunofluorescence microscopy of metaphase (M) chromosomes, are also present in G

Indexed as

Epigenesis, GeneticAcetylationCell CycleChromatinChromosomesHeLa CellsHistone CodeHistonesHumansLysineMethylationMitosisNucleosomesProtein Processing, Post-TranslationalChromatinhistone H3 trimethyl Lys4HistonesLysineNucleosomes

Identifiers

PMID33542322
PMCPMC7862352
OpenAlexW3126334156

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.