Evidence map›Paper›PMID 33542196›Full record

ArticleTranslational psychiatry2021

Multi-omic and multi-species meta-analyses of nicotine consumption.

Rohan H C Palmer, Chelsie E Benca-Bachman, Spencer B Huggett, Jason A Bubier, John E McGeary, Nikhil Ramgiri, Jenani Srijeyanthan, Jingjing Yang, Peter M Visscher, Jian Yang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Gene expression genetics of the striatum of Diversity Outbred mice.bioRxiv : the preprint server for biology · 2023
    Article
  8. Testing Association of Previously Implicated Gene Sets and Gene-Networks in Nicotine Exposed Mouse Models with Human Smoking Phenotypes.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Rohan H C Palmer *Behavioral Genetics of Addiction Laboratory, Department of Psychology, Emory University, Atlanta, GA, USA. Rohan.Palmer@Emory.edu.ORCID 0000-0002-6809-9962
Chelsie E Benca-Bachman *Behavioral Genetics of Addiction Laboratory, Department of Psychology, Emory University, Atlanta, GA, USA.ORCID 0000-0002-5372-4593
Spencer B Huggett *Behavioral Genetics of Addiction Laboratory, Department of Psychology, Emory University, Atlanta, GA, USA.
Jason A Bubier *The Jackson Laboratory, Bar Harbor, ME, USA.ORCID 0000-0001-5013-1234
John E McGeary *Department of Psychiatry and Human Behavior, Brown University, Providence, RI, USA.
Nikhil RamgiriBehavioral Genetics of Addiction Laboratory, Department of Psychology, Emory University, Atlanta, GA, USA.
Jenani SrijeyanthanBehavioral Genetics of Addiction Laboratory, Department of Psychology, Emory University, Atlanta, GA, USA.
Jingjing YangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Peter M VisscherInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID 0000-0002-2143-8760
Jian YangInstitute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia.ORCID 0000-0003-2001-2474
Valerie S KnopikDepartment of Human Development and Family Studies, Purdue University, West Lafayette, IN, USA.
Elissa J CheslerThe Jackson Laboratory, Bar Harbor, ME, USA.ORCID 0000-0002-5642-5062
Emory University · USJackson Laboratory · USBrown University · USPurdue University West Lafayette · USThe University of Queensland · AU

Funding

Wave IV Data CollectionP01HD031921 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HARRIS, KATHLEEN MULLAN · 1994 to 2020
$86.1M
Data Structures, Algorithms and Tools for Ontological DiscoveryR01AA018776 · NIAAA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2010 to 2019
$3.9M
The Kinship Risk Score: An Integrative Tool to Prioritize Alcohol and Drug-Addiction Related Genes for Enhanced Risk PredictionDP1DA042103 · NIDA · EMORY UNIVERSITY · PI PALMER, ROHAN HUGH CRAIG · 2017 to 2021
$2.3M
MEASURING CAREGIVER MEDICATION ADMINISTRATION HASSLESR03AG018776 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI TRAVIS, SHIRLEY S · 2000 to 2000
$65k
NIAAA NIH HHS R01 AA018776NICHD NIH HHS P01 HD031921NIDA NIH HHS DP1 DA042103U.S. Department of Health & Human Services | NIH | National Institute on Alcohol Abuse and Alcoholism (NIAAA) R01AA018776Wellcome Trust
6 · The paper itself

Abstract

Cross-species translational approaches to human genomic analyses are lacking. The present study uses an integrative framework to investigate how genes associated with nicotine use in model organisms contribute to the genetic architecture of human tobacco consumption. First, we created a model organism geneset by collecting results from five animal models of nicotine exposure (RNA expression changes in brain) and then tested the relevance of these genes and flanking genetic variation using genetic data from human cigarettes per day (UK BioBank N = 123,844; all European Ancestry). We tested three hypotheses: (1) DNA variation in, or around, the 'model organism geneset' will contribute to the heritability to human tobacco consumption, (2) that the model organism genes will be enriched for genes associated with human tobacco consumption, and (3) that a polygenic score based off our model organism geneset will predict tobacco consumption in the AddHealth sample (N = 1667; all European Ancestry). Our results suggested that: (1) model organism genes accounted for ~5-36% of the observed SNP-heritability in human tobacco consumption (enrichment: 1.60-31.45), (2) model organism genes, but not negative control genes, were enriched for the gene-based associations (MAGMA, H-MAGMA, SMultiXcan) for human cigarettes per day, and (3) polygenic scores based on our model organism geneset predicted cigarettes per day in an independent sample. Altogether, these findings highlight the advantages of using multiple species evidence to isolate genetic factors to better understand the etiological complexity of tobacco and other nicotine consumption.

Indexed as

BrainNicotineAnimalsGenome, HumanHumansModels, AnimalMultifactorial InheritanceNicotine

Identifiers

PMID33542196
PMCPMC7862377
OpenAlexW3126169285

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.