Evidence map›Paper›PMID 33541381›Full record

ArticleMicrobial cell factories2021

Towards a 'chassis' for bacterial magnetosome biosynthesis: genome streamlining of Magnetospirillum gryphiswaldense by multiple deletions.

Theresa Zwiener, Marina Dziuba, Frank Mickoleit, Christian Rückert, Tobias Busche, Jörn Kalinowski, René Uebe, Dirk Schüler

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Promising non-model microbial cell factories obtained by genome reduction.Frontiers in bioengineering and biotechnology · 2024
    Review
  4. Genome reduction inFrontiers in bioengineering and biotechnology · 2024
    Article
  5. Article
  6. Review
  7. The Magnetosome Protein, Mms6 fromInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Theresa ZwienerDepartment of Microbiology, University of Bayreuth, Bayreuth, Germany.ORCID http://orcid.org/0000-0003-0619-2763
Marina DziubaDepartment of Microbiology, University of Bayreuth, Bayreuth, Germany.
Frank MickoleitDepartment of Microbiology, University of Bayreuth, Bayreuth, Germany.
Christian RückertCenter for Biotechnology, University of Bielefeld, Bielefeld, Germany.
Tobias BuscheCenter for Biotechnology, University of Bielefeld, Bielefeld, Germany.
Jörn KalinowskiCenter for Biotechnology, University of Bielefeld, Bielefeld, Germany.
René UebeDepartment of Microbiology, University of Bayreuth, Bayreuth, Germany.
Dirk SchülerDepartment of Microbiology, University of Bayreuth, Bayreuth, Germany. dirk.schueler@uni-bayreuth.de.
University of Bayreuth · DEBielefeld University · DERussian Academy of Sciences · RU

Funding

European Research Council (ERC) 692637Federal Ministry of Education and Research (BMBF) MagBioFab
6 · The paper itself

Abstract

backgroundBecause of its tractability and straightforward cultivation, the magnetic bacterium Magnetospirillum gryphiswaldense has emerged as a model for the analysis of magnetosome biosynthesis and bioproduction. However, its future use as platform for synthetic biology and biotechnology will require methods for large-scale genome editing and streamlining.

resultsWe established an approach for combinatory genome reduction and generated a library of strains in which up to 16 regions including large gene clusters, mobile genetic elements and phage-related genes were sequentially removed, equivalent to ~ 227.6 kb and nearly 5.5% of the genome. Finally, the fragmented genomic magnetosome island was replaced by a compact cassette comprising all key magnetosome biosynthetic gene clusters. The prospective 'chassis' revealed wild type-like cell growth and magnetosome biosynthesis under optimal conditions, as well as slightly improved resilience and increased genetic stability.

conclusionWe provide first proof-of-principle for the feasibility of multiple genome reduction and large-scale engineering of magnetotactic bacteria. The library of deletions will be valuable for turning M. gryphiswaldense into a microbial cell factory for synthetic biology and production of magnetic nanoparticles.

Indexed as

Gene DeletionGenome, BacterialMagnetosomesMagnetospirillumChassisGenome reductionIS elementsMagnetosomesMagnetospirillum gryphiswaldenseMagnetotactic bacteria

Identifiers

PMID33541381
PMCPMC7860042
OpenAlexW3128637337

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.