Evidence map›Paper›PMID 33539355›Full record

ArticlePLoS neglected tropical diseases2021

Prevalence and evolutionary analyses of human T-cell lymphotropic virus in Guangdong province, China: Transcontinental and Japanese subtype lineages dominate the prevalence.

Qiao Liao, Zhengang Shan, Min Wang, Jieting Huang, Ru Xu, Tingting Li, Wenjing Wang, Chengyao Li, Xia Rong, Yongshui Fu

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qiao LiaoGuangzhou Blood Center, Guangdong, China.ORCID 0000-0002-1422-6161
Zhengang ShanGuangzhou Blood Center, Guangdong, China.
Min WangGuangzhou Blood Center, Guangdong, China.
Jieting HuangGuangzhou Blood Center, Guangdong, China.ORCID 0000-0002-2886-9344
Ru XuGuangzhou Blood Center, Guangdong, China.
Tingting LiSchool of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China.
Wenjing WangSchool of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China.ORCID 0000-0001-9803-8565
Chengyao LiSchool of Laboratory Medicine and Biotechnology, Southern Medical University, Guangzhou, Guangdong, China.
Xia RongGuangzhou Blood Center, Guangdong, China.
Yongshui FuGuangzhou Blood Center, Guangdong, China.
Guangzhou Blood Center · CNSouthern Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To systematically characterize the prevalence and evolution of human T-cell lymphotropic virus (HTLV) infection among voluntary blood donors (BDs) in Guangdong province, China. A three-year survey for HTLV epidemiology among BDs was performed in Guangdong during 2016-2018. Anti-HTLV-1/2 was screened by ELISA and ECLIA, and subsequently confirmed by western blot (WB) and nucleic acid testing (NAT). The prevalence of HTLV in donors from different cities was calculated. The identified HTLV-positive cases were phylogenetically genotyped and analyzed in a Bayesian phylogenetic framework. Among 3,262,271 BDs, 59 were confirmed positive for HTLV-1 (1.81 per 100,000) and no HTLV-2 infection was found. The prevalence of HTLV-1 varied significantly among 21 cities in Guangdong province, China. The highest prevalence was found in donors from Shanwei (13.94 per 100,000), which is a coastal city in eastern Guangdong. Viral genomic sequences genotyped from 55 HTLV-1 carriers showed that 39 were transcontinental subtype and 16 were Japanese subtype. Specially, 13 out of 39 transcontinental subtype sequences were characterized with L55P mutation and 21 out of 55 sequences were characterized with L19F mutation in viral gp46 protein. The L55P mutation seemed be specific to eastern Asia since it only presented in the sequences from Japan, mainland China, and Taiwan. Phylogenetic analysis of gp46 gene shows that HTLV-1a may have been introduced to Guangdong through four different introduction events and formed major transmission clusters: clades I(13,602 years ago), II(16, 010 years ago), III(15,639 years ago) and IV(16,517 years ago). In general, Guangdong is considered to be a low-prevalence region for HTLV-1 infection, but the prevalence is significantly higher in Shanwei city. Transcontinental and Japanese subtype lineages dominate the prevalence in Guangdong. In terms of blood safety, HTLV antibody screening for first-time blood donors can effectively reduce the risk of HTLV transmission.

Indexed as

Blood DonorsAdultBayes TheoremBlotting, WesternChinaEnzyme-Linked Immunosorbent AssayFemaleGenotypeHTLV-II InfectionsHTLV-I InfectionsHumansHuman T-lymphotropic virus 1MaleMiddle AgedPhylogenyPrevalence

Identifiers

PMID33539355
PMCPMC7888662
OpenAlexW3128917841

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.