Evidence map›Paper›PMID 33538599›Full record

ArticleJournal of chemical information and modeling2021

Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Arkajyoti Sengupta, Zhen Li, Lin Frank Song, Pengfei Li, Kenneth M Merz

Erratum issuedAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

  1. Article
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  10. Reparameterization of the Amber RNA Force Field Non-Bonded Terms.bioRxiv : the preprint server for biology · 2026
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  11. Determinants of centromeric nucleosome conformation.bioRxiv : the preprint server for biology · 2026
    Article
  12. A novel approach to combatMicrobiology spectrum · 2026
    Article
  13. Destabilization of Structured RNAs by OPC and TIP4PD Water Models.Journal of chemical theory and computation · 2026
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Arkajyoti SenguptaDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.
Zhen LiDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-7947-3887
Lin Frank SongDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0002-1854-5215
Pengfei LiDepartment of Chemistry, Yale University, New Haven, Connecticut 06511, United States.ORCID 0000-0002-2572-5935
Kenneth M MerzDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.ORCID 0000-0001-9139-5893

Funding

Simulation of Proton and Hydride Transfer in EnzymesR37GM056207 · NIGMS · YALE UNIVERSITY · PI HAMMES-SCHIFFER, SHARON · 2011 to 2020
$3.2M
SIMULATION OF PROTON AND HYDRIDE TRANSFER IN ENZYMESR01GM056207 · NIGMS · UNIVERSITY OF NOTRE DAME · PI HAMMES-SCHIFFER, SHARON · 1998 to 2010
$2.7M
Modeling Transition Metal Ion Binding to ProteinsR01GM130641 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KENNETH M. MERZ · 2019 to 2026
$2.5M
Mettalloenzyme Structure/FunctionR01GM044974 · NIGMS · UNIVERSITY OF FLORIDA · PI MERZ, KENNETH M. · 1997 to 2010
$2.0M
The Bioinorganic Chemistry of Nickel: The UreasesR01GM066859 · NIGMS · UNIVERSITY OF FLORIDA · PI DEUMENS, ERIK · 2003 to 2011
$1.9M
NIGMS NIH HHS R01 GM044974NIGMS NIH HHS R01 GM056207NIGMS NIH HHS R01 GM066859NIGMS NIH HHS R01 GM130641NIGMS NIH HHS R37 GM056207
6 · The paper itself

Abstract

Monovalent ions play significant roles in various biological and material systems. Recently, four new water models (OPC3, OPC, TIP3P-FB, and TIP4P-FB), with significantly improved descriptions of condensed phase water, have been developed. The pairwise interaction between the metal ion and water necessitates the development of ion parameters specifically for these water models. Herein, we parameterized the 12-6 and the 12-6-4 nonbonded models for 12 monovalent ions with the respective four new water models. These monovalent ions contain eight cations including alkali metal ions (Li

Indexed as

MetalsWaterEntropyIonsThermodynamicsIonsMetalsWater

Identifiers

PMID33538599
PMCPMC8173365

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.