Evidence map›Paper›PMID 33537046›Full record

ArticleFrontiers in plant science2020

Integrated Metabolome and Transcriptome Analyses Reveal Etiolation-Induced Metabolic Changes Leading to High Amino Acid Contents in a Light-Sensitive Japanese Albino Tea Cultivar.

Hiroto Yamashita, Yuka Kambe, Megumi Ohshio, Aya Kunihiro, Yasuno Tanaka, Toshikazu Suzuki, Yoriyuki Nakamura, Akio Morita, Takashi Ikka

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 32 citations in OpenAlex.

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  10. Horticulture research · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Hiroto YamashitaFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Yuka KambeFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Megumi OhshioFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Aya KunihiroFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Yasuno TanakaFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Toshikazu SuzukiTea Research Center, Shizuoka Prefectural Research Institute of Agriculture and Forestry, Shizuoka, Japan.
Yoriyuki NakamuraGraduate Division of Nutritional and Environmental Science, Tea Science Center, University of Shizuoka, Shizuoka, Japan.
Akio MoritaFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Takashi IkkaFaculty of Agriculture, Shizuoka University, Shizuoka, Japan.
Shizuoka University · JPGifu University · JPShizuoka Prefecture Agricultural and Forestry Research Institute · JPUniversity of Shizuoka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant albinism causes the etiolation of leaves because of factors such as deficiency of chloroplasts or chlorophylls. In general, albino tea leaves accumulate higher free amino acid (FAA) contents than do conventional green tea leaves. To explore the metabolic changes of etiolated leaves (EL) in the light-sensitive Japanese albino tea cultivar "Koganemidori," we performed integrated metabolome and transcriptome analyses by comparing EL with green leaves induced by bud-sport mutation (BM) or shading treatments (S-EL). Comparative omics analyses indicated that etiolation-induced molecular responses were independent of the light environment and were largely influenced by the etiolation itself. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment and pathway analyses revealed the downregulation of genes involved in chloroplast development and chlorophyll biosynthesis and upregulation of protein degradation-related pathways, such as the ubiquitin-proteasome system and autophagy in EL. Metabolome analysis showed that most quantified FAAs in EL were highly accumulated compared with those in BM and S-EL. Genes involved in the tricarboxylic acid (TCA) cycle, nitrogen assimilation, and the urea cycle, including the drastically downregulated

Indexed as

albinoamino acidsetiolationintegrated omicsmetabolometea planttranscriptome

Identifiers

PMID33537046
PMCPMC7847902
OpenAlexW3124533275

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.