ArticleScientific reports2021
Population structure, genetic diversity and genomic selection signatures among a Brazilian common bean germplasm.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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35 citing papers in PubMed.
- Genetic diversity and population structure of wild and cultivated Camellia tetracocca Chang assessed by ILP markers: insights for conservation of an endangered tea species.BMC plant biology · 2026Article
- Towards Stewardship of Wild Species and Their Domesticated Counterparts: A Case Study in Northern Wild Rice (Ecology and evolution · 2025Article
- Population genomics of Brazilian native fruit species ofFrontiers in plant science · 2025Article
- Identifying the physiological traits associated with DNA marker using genome wide association in wheat under heat stress.Scientific reports · 2024Article
- Analysis of population structure and genetic diversity of Camellia tachangensis in Guizhou based on SNP markers.Molecular biology reports · 2024Article
- A genomic toolkit for winged bean Psophocarpus tetragonolobus.Nature communications · 2024Article
- Genomic insights into genetic diversity and seed coat color change in common bean composite populations.Frontiers in plant science · 2024Article
- Genetic Parameter and Hyper-Parameter Estimation Underlie Nitrogen Use Efficiency in Bread Wheat.International journal of molecular sciences · 2023Article
- Whole-genome resequencing of common bean elite breeding lines.Scientific reports · 2023Article
- Assessing the Genetic Diversity of Daylily Germplasm Using SSR Markers: Implications for Daylily Breeding.Plants (Basel, Switzerland) · 2023Article
- Utilizing Genomics to Characterize the Common Oat Gene Pool-The Story of More Than a Century of Polish Breeding.International journal of molecular sciences · 2023Article
- Genome-wide association mapping for LLS resistance in a MAGIC population of groundnut (Arachis hypogaea L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Genome-wide association analysis reveals the optimal genomic regions for pod size in bean.Frontiers in plant science · 2023Article
- Agro-morphological and genetic variability analysis in oat germplasms with special emphasis on food and feed.PloS one · 2023Article
- Article
- Mapping yield and yield-related traits using diverse common bean germplasm.Frontiers in genetics · 2023Article
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- Quantitative Trait Locus Mapping of Marsh Spot Disease Resistance in Cranberry Common Bean (International journal of molecular sciences · 2022Article
- Genetic diversity of common bean (Saudi journal of biological sciences · 2022Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Brazil is the world's largest producer of common bean. Knowledge of the genetic diversity and relatedness of accessions adapted to Brazilian conditions is of great importance for the conservation of germplasm and for directing breeding programs aimed at the development of new cultivars. In this context, the objective of this study was to analyze the genetic diversity, population structure, and linkage disequilibrium (LD) of a diversity panel consisting of 219 common bean accessions, most of which belonging to the Mesoamerican gene pool. Genotyping by sequencing (GBS) of these accessions allowed the identification of 49,817 SNPs with minor allele frequency > 0.05. Of these, 17,149 and 12,876 were exclusive to the Mesoamerican and Andean pools, respectively, and 11,805 SNPs could differentiate the two gene pools. Further the separation according to the gene pool, bayesian analysis of the population structure showed a subdivision of the Mesoamerican accessions based on the origin and color of the seed tegument. LD analysis revealed the occurrence of long linkage blocks and low LD decay with physical distance between SNPs (LD half decay in 249 kb, corrected for population structure and relatedness). The GBS technique could effectively characterize the Brazilian common bean germplasms, and the diversity panel used in this study may be of great use in future genome-wide association studies.
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