Evidence map›Paper›PMID 33536451›Full record

Observational studyScientific reports2021

Deep learning for the fully automated segmentation of the inner ear on MRI.

Akshayaa Vaidyanathan, Marly F J A van der Lubbe, Ralph T H Leijenaar, Marc van Hoof, Fadila Zerka, Benjamin Miraglio, Sergey Primakov, Alida A Postma, Tjasse D Bruintjes, Monique A L Bilderbeek and 8 more

Abstract readObservational StudyValidation Study
In one paragraph

Observational study in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  16. Current State of Artificial Intelligence in Clinical Applications for Head and Neck MR Imaging.Magnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2023
    Review
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  20. Research and application progress in deep learning in otology.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Akshayaa VaidyanathanThe D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, Maastricht, The Netherlands. akshayaa.vaidyanathan@oncoradiomics.com.
Marly F J A van der LubbeDepartment of Otolaryngology and Head and Neck Surgery, Maastricht University Medical Center, Maastricht, The Netherlands.
Ralph T H LeijenaarOncoradiomics SA, Clos Chanmurly 13, 4000, Liège, Belgium.
Marc van HoofDepartment of Otolaryngology and Head and Neck Surgery, Maastricht University Medical Center, Maastricht, The Netherlands.
Fadila ZerkaOncoradiomics SA, Clos Chanmurly 13, 4000, Liège, Belgium.
Benjamin MiraglioOncoradiomics SA, Clos Chanmurly 13, 4000, Liège, Belgium.
Sergey PrimakovThe D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, Maastricht, The Netherlands.
Alida A PostmaDepartment of Radiology and Nuclear Medicine, Maastricht University Medical Center, Maastricht, The Netherlands.
Tjasse D BruintjesDepartment of Otorhinolaryngology, Gelre Hospital, Apeldoorn, The Netherlands.
Monique A L BilderbeekDepartment of Radiology, Viecuri Medical Center, Venlo, The Netherlands.
Hammer SebastiaanHaga Hospital, Radiology, Els Borst-Eilersplein 275, Den Haag, Zuid-Holland, The Netherlands.
Patrick F M DammeijerDepartment of Otorhinolaryngology, Viecuri Medical Center, Venlo, The Netherlands.
Vincent van RompaeyDepartment of Otorhinolaryngology and Head & Neck Surgery, Antwerp University Hospital, Antwerp, Belgium.
Henry C WoodruffThe D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, Maastricht, The Netherlands.
Wim VosOncoradiomics SA, Clos Chanmurly 13, 4000, Liège, Belgium.
Seán WalshOncoradiomics SA, Clos Chanmurly 13, 4000, Liège, Belgium.
Raymond van de Berg *Department of Otolaryngology and Head and Neck Surgery, Maastricht University Medical Center, Maastricht, The Netherlands.
Philippe Lambin *The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, Maastricht, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Segmentation of anatomical structures is valuable in a variety of tasks, including 3D visualization, surgical planning, and quantitative image analysis. Manual segmentation is time-consuming and deals with intra and inter-observer variability. To develop a deep-learning approach for the fully automated segmentation of the inner ear in MRI, a 3D U-net was trained on 944 MRI scans with manually segmented inner ears as reference standard. The model was validated on an independent, multicentric dataset consisting of 177 MRI scans from three different centers. The model was also evaluated on a clinical validation set containing eight MRI scans with severe changes in the morphology of the labyrinth. The 3D U-net model showed precise Dice Similarity Coefficient scores (mean DSC-0.8790) with a high True Positive Rate (91.5%) and low False Discovery Rate and False Negative Rates (14.8% and 8.49% respectively) across images from three different centers. The model proved to perform well with a DSC of 0.8768 on the clinical validation dataset. The proposed auto-segmentation model is equivalent to human readers and is a reliable, consistent, and efficient method for inner ear segmentation, which can be used in a variety of clinical applications such as surgical planning and quantitative image analysis.

Indexed as

Deep LearningMagnetic Resonance ImagingAdultAgedDatasets as TopicEar, InnerFeasibility StudiesFemaleHumansImaging, Three-DimensionalMaleMiddle Aged

Identifiers

PMID33536451
PMCPMC7858625

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.