Evidence map›Paper›PMID 33535042›Full record

ArticleCell reports2021

Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a regulator of insulin secretion.

Ming Hu, Inês Cebola, Gaelle Carrat, Shuying Jiang, Sameena Nawaz, Amna Khamis, Mickaël Canouil, Philippe Froguel, Anke Schulte, Michele Solimena and 8 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Multiple genetic variants at the SLC30A8 locus affect local super-enhancer activity and influence pancreatic β-cell survival and function.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  5. Multiple genetic variants at thebioRxiv : the preprint server for biology · 2023
    Article
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 13 institutions in 8 countries.

Ming HuSection of Cell Biology and Functional Genomics, Department of Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Inês CebolaSection of Genetics and Genomics, Department of Metabolism, Digestion, and Reproduction, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Gaelle CarratSection of Cell Biology and Functional Genomics, Department of Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Shuying JiangSection of Cell Biology and Functional Genomics, Department of Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Sameena NawazOxford Centre for Diabetes Endocrinology and Metabolism, University of Oxford, Churchill Hospital, Headington, Oxford OX3 7LE, UK.
Amna KhamisUniversité de Lille, CNRS, CHU Lille, Institut Pasteur de Lille, UMR 8199 - EGID, 59000 Lille, France.
Mickaël CanouilUniversité de Lille, CNRS, CHU Lille, Institut Pasteur de Lille, UMR 8199 - EGID, 59000 Lille, France.
Philippe FroguelUniversité de Lille, CNRS, CHU Lille, Institut Pasteur de Lille, UMR 8199 - EGID, 59000 Lille, France.
Anke SchulteSanofi-Aventis Deutschland GmbH, 65926 Frankfurt am Main, Germany.
Michele SolimenaPaul Langerhans Institute of the Helmholtz Center Munich at the University Hospital and Faculty of Medicine, TU Dresden, 01307 Dresden, Germany.
Mark IbbersonVital-IT Group, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Piero MarchettiDepartment of Endocrinology and Metabolism, University of Pisa, 56126 Pisa, Italy.
Fabian L Cardenas-DiazDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA; Centre for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Paul J GadueDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA; Centre for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Benoit HastoyOxford Centre for Diabetes Endocrinology and Metabolism, University of Oxford, Churchill Hospital, Headington, Oxford OX3 7LE, UK.
Leonardo Almeida-SouzaHiLIFE Institute of Biotechnology & Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.
Harvey McMahonMRC MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.
Guy A RutterSection of Cell Biology and Functional Genomics, Department of Medicine, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK; Lee Kong Chian School of Medicine, Nan Yang Technological University, Singapore, Singapore. Electronic address: g.rutter@imperial.ac.uk.
Hammersmith Hospital · GBInstitut Pasteur de Lille · FRCentre Hospitalier Universitaire de Lille · FRChildren's Hospital of Philadelphia · USChurchill Hospital · GBMRC Laboratory of Molecular Biology · GBOxford Centre for Diabetes, Endocrinology and Metabolism · GBPaul Langerhans Institute Dresden · DESanofi (Germany) · DESIB Swiss Institute of Bioinformatics · CHUniversity of Helsinki · FIUniversity of Pennsylvania · USUniversity of Pisa · IT

Funding

HNF1A in human endocrine cell development and functionR01DK123162 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI GADUE, PAUL J · 2020 to 2023
$2.1M
British Heart FoundationMedical Research Council MC_U105178795Medical Research Council MR/J0003042/1Medical Research Council MR/L020149/1Medical Research Council MR/L02036X/1Medical Research Council MR/N00275X/1Medical Research Council MR/R010676/1Medical Research Council MR/R022259/1Medical Research Council MR/S025618/1NIDDK NIH HHS R01 DK123162Wellcome TrustWellcome Trust 212625/Z/18/ZWellcome Trust WT098424AIA
6 · The paper itself

Abstract

Using chromatin conformation capture, we show that an enhancer cluster in the STARD10 type 2 diabetes (T2D) locus forms a defined 3-dimensional (3D) chromatin domain. A 4.1-kb region within this locus, carrying 5 T2D-associated variants, physically interacts with CTCF-binding regions and with an enhancer possessing strong transcriptional activity. Analysis of human islet 3D chromatin interaction maps identifies the FCHSD2 gene as an additional target of the enhancer cluster. CRISPR-Cas9-mediated deletion of the variant region, or of the associated enhancer, from human pancreas-derived EndoC-βH1 cells impairs glucose-stimulated insulin secretion. Expression of both STARD10 and FCHSD2 is reduced in cells harboring CRISPR deletions, and lower expression of STARD10 and FCHSD2 is associated, the latter nominally, with the possession of risk variant alleles in human islets. Finally, CRISPR-Cas9-mediated loss of STARD10 or FCHSD2, but not ARAP1, impairs regulated insulin secretion. Thus, multiple genes at the STARD10 locus influence β cell function.

Indexed as

Carrier ProteinsChromatinHumansInsulin-Secreting CellsMembrane ProteinsPhosphoproteinsCarrier ProteinsChromatinFCHSD2 protein, humanMembrane ProteinsPhosphoproteinsSTARD10 protein, humanchromatin structureenhancer clusterFCHSD2gene regulationgenetic variantGWASinsulin secretionSTARD10T2Dtype 2 diabetes

Identifiers

PMID33535042
PMCPMC7856552
OpenAlexW3128839584

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.