Evidence map›Paper›PMID 33534558›Full record

ArticleJournal of chemical information and modeling2021

Development of a Pantetheine Force Field Library for Molecular Modeling.

Shiji Zhao, Andrew J Schaub, Shiou-Chuan Tsai, Ray Luo

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Advances in the Directed Evolution of Computer-aided Enzymes.Current topics in medicinal chemistry · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Total flavonoids extracted fromFrontiers in pharmacology · 2023
    Article
  7. Article
  8. Journal of chemical theory and computation · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shiji ZhaoDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0002-4514-0897
Andrew J SchaubDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0001-7770-7045
Shiou-Chuan TsaiDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0002-7082-9178
Ray LuoDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0002-6346-8271
University of California, Irvine · US

Funding

Multi-scaled Modeling of Electrostatic and Polarization Effects in BiomoleculesR35GM130367 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI RAY LUO · 2019 to 2026
$3.0M
AMBER/PBSA: An Open-Source Computer Program for Accurate and Scalable Solvation Analysis ofBiomoleculesR01GM093040 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LUO, RAY · 2010 to 2018
$2.2M
The Molecular Basis of Regio-Specificity in Fungal Polyketide SynthaseR01GM100305 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BURKART, MICHAEL D., TSAI, SHIOU-CHUAN · 2012 to 2015
$1.6M
The Ketoreduction and Cyclization of Aromatic Polyketide BiosynthesisR01GM076330 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI TSAI, SHIOU-CHUAN · 2007 to 2011
$1.3M
NIGMS NIH HHS R01 GM076330NIGMS NIH HHS R01 GM093040NIGMS NIH HHS R01 GM100305NIGMS NIH HHS R35 GM130367
6 · The paper itself

Abstract

Pantetheine is ubiquitous in nature in various forms of pantetheine-containing ligands (PCLs), including coenzyme A and phosphopantetheine. Lack of scalable force field libraries for PCLs has hampered the computational studies of biological macromolecules containing PCLs. We describe here the development of the first generation Pantetheine Force Field (PFF) library that is compatible with Amber force fields; parameterized using Gasteiger, AM1-BCC, or RESP charging methods combined with

Indexed as

Molecular Dynamics SimulationPantetheineGene LibraryLigandsLigandsPantetheine

Identifiers

PMID33534558
PMCPMC8266206
OpenAlexW3128395058

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.