Evidence map›Paper›PMID 33533919›Full record

ArticleNucleic acids research2021

Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers.

Fabienne Bejjani, Claire Tolza, Mathias Boulanger, Damien Downes, Raphaël Romero, Muhammad Ahmad Maqbool, Amal Zine El Aabidine, Jean-Christophe Andrau, Sophie Lebre, Laurent Brehelin and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  10. Article
  11. Role of Fra-2 in cancer.Cell death and differentiation · 2024
    Review
  12. Article
  13. Article
  14. FRA-1 as a Regulator of EMT and Metastasis in Breast Cancer.International journal of molecular sciences · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Journal of Cancer · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 4 countries.

Fabienne BejjaniIGMM, Univ Montpellier, CNRS, Montpellier, France.
Claire TolzaIGMM, Univ Montpellier, CNRS, Montpellier, France.
Mathias BoulangerIGMM, Univ Montpellier, CNRS, Montpellier, France.
Damien DownesMedical Research Council, Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, Oxford University, Oxford, UK.
Raphaël RomeroIMAG, Univ Montpellier, CNRS, Montpellier, France.
Muhammad Ahmad MaqboolIGMM, Univ Montpellier, CNRS, Montpellier, France.
Amal Zine El AabidineIGMM, Univ Montpellier, CNRS, Montpellier, France.
Jean-Christophe AndrauIGMM, Univ Montpellier, CNRS, Montpellier, France.
Sophie LebreIMAG, Univ Montpellier, CNRS, Montpellier, France.
Laurent BrehelinLIRMM, Univ Montpellier, CNRS, Montpellier, France.
Hughes ParrinelloMontpellier GenomiX, MGX, BioCampus Montpellier, CNRS, INSERM, Univ. Montpellier, F-34094 Montpellier, France.
Marine RohmerMontpellier GenomiX, MGX, BioCampus Montpellier, CNRS, INSERM, Univ. Montpellier, F-34094 Montpellier, France.
Tony KaomaComputational Biomedecine, Quantitative Biology Unit, Luxembourg Institute of Health, Strassen, Luxembourg.
Laurent VallarProteome and Genome Research Unit, Department of Oncology, Luxembourg Institute of Health, Luxembourg, Luxembourg.
Jim R HughesMedical Research Council, Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, Oxford University, Oxford, UK.
Kazem ZibaraPRASE, DSST, ER045, Lebanese University, Beirut, Lebanon.
Charles-Henri LecellierIGMM, Univ Montpellier, CNRS, Montpellier, France.
Marc PiechaczykIGMM, Univ Montpellier, CNRS, Montpellier, France.
Isabelle Jariel-EncontreIGMM, Univ Montpellier, CNRS, Montpellier, France.
Centre National de la Recherche Scientifique · FRLuxembourg Institute of Health · LUUniversity of Oxford · GBLebanese University · LB

Funding

Medical Research Council MC_UU_00016/1Medical Research Council MC_UU_00016/14Medical Research Council MC_UU_12009/15Medical Research Council MR/N00969X/1Medical Research Council MR/T014067/1Wellcome TrustWellcome Trust 106130/Z/14/Z
6 · The paper itself

Abstract

The ubiquitous family of dimeric transcription factors AP-1 is made up of Fos and Jun family proteins. It has long been thought to operate principally at gene promoters and how it controls transcription is still ill-understood. The Fos family protein Fra-1 is overexpressed in triple negative breast cancers (TNBCs) where it contributes to tumor aggressiveness. To address its transcriptional actions in TNBCs, we combined transcriptomics, ChIP-seqs, machine learning and NG Capture-C. Additionally, we studied its Fos family kin Fra-2 also expressed in TNBCs, albeit much less. Consistently with their pleiotropic effects, Fra-1 and Fra-2 up- and downregulate individually, together or redundantly many genes associated with a wide range of biological processes. Target gene regulation is principally due to binding of Fra-1 and Fra-2 at regulatory elements located distantly from cognate promoters where Fra-1 modulates the recruitment of the transcriptional co-regulator p300/CBP and where differences in AP-1 variant motif recognition can underlie preferential Fra-1- or Fra-2 bindings. Our work also shows no major role for Fra-1 in chromatin architecture control at target gene loci, but suggests collaboration between Fra-1-bound and -unbound enhancers within chromatin hubs sometimes including promoters for other Fra-1-regulated genes. Our work impacts our view of AP-1.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, NeoplasticBinding SitesCell Line, TumorChromatinEpigenesis, GeneticFos-Related Antigen 1Fos-Related Antigen-2HumansNucleotide Motifsp300-CBP Transcription FactorsPromoter Regions, GeneticProto-Oncogene Proteins c-fosTranscription Factor AP-1Triple Negative Breast NeoplasmsChromatinFOSL2 protein, humanFos-Related Antigen 1Fos-Related Antigen-2p300-CBP Transcription FactorsProto-Oncogene Proteins c-fosTranscription Factor AP-1

Identifiers

PMID33533919
PMCPMC7968996
OpenAlexW3128139504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.