Evidence map›Paper›PMID 33531581›Full record

ArticleScientific reports2021

Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma.

Michael R Moore, Isabel D Friesner, Emanuelle M Rizk, Benjamin T Fullerton, Manas Mondal, Megan H Trager, Karen Mendelson, Ijeuru Chikeka, Tahsin Kurc, Rajarsi Gupta and 19 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 3 countries.

Michael R Moore *Department of Medicine, Columbia University Irving Medical Center, P&S 9-428, 630 W 168th St., New York, NY, 10032, USA.
Isabel D Friesner *Department of Anesthesiology, Perioperative Care and Pain Medicine, NYU School of Medicine, NYULMC, 435 E 30th St., SB-1008, New York, NY, 10016, USA.
Emanuelle M Rizk *Department of Medicine, Columbia University Irving Medical Center, P&S 9-428, 630 W 168th St., New York, NY, 10032, USA.
Benjamin T FullertonDepartment of Medicine, Columbia University Irving Medical Center, P&S 9-428, 630 W 168th St., New York, NY, 10032, USA.
Manas MondalDepartment of Medicine, Columbia University Irving Medical Center, P&S 9-428, 630 W 168th St., New York, NY, 10032, USA.
Megan H TragerVagelos College of Physicians and Surgeons, Columbia University, New York, NY, USA.
Karen MendelsonDepartment of Dermatology, Pathology, and Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ijeuru ChikekaDepartment of Dermatology, Columbia University Irving Medical Center, New York, NY, USA.
Tahsin KurcDepartment of Biomedical Informatics, Stony Brook Medicine, Stony Brook, NY, USA.
Rajarsi GuptaDepartment of Biomedical Informatics, Stony Brook Medicine, Stony Brook, NY, USA.
Bethany R RohrDepartment of Dermatology, University Hospitals Cleveland Medical Center/Case Western Reserve University School of Medicine, Cleveland, USA.
Eric J RobinsonOregon Health and Science University School of Medicine, Portland, OR, USA.
Balazs AcsDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.
Rui ChangDepartment of Neurology, University of Arizona, Tucson, AZ, USA.
Harriet KlugerDepartment of Medicine, Yale School of Medicine, New Haven, CT, USA.
Bret TabackDepartment of Surgery, Columbia University Irving Medical Center, New York, NY, USA.
Larisa J GeskinDepartment of Dermatology, Columbia University Irving Medical Center, New York, NY, USA.
Basil HorstDepartment of Pathology, University of British Columbia, Vancouver, Canada.
Kevin GardnerDepartment of Pathology, Columbia University Irving Medical Center, PH15-1582, 622 W 168th St., New York, NY, 10032, USA.
George NiedtDepartment of Dermatology, Columbia University Irving Medical Center, New York, NY, USA.
Julide T CelebiDepartment of Dermatology, Pathology, and Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Robyn D Gartrell-CorradoDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Jane MessinaDepartment of Cutaneous Oncology, The Moffitt Cancer Center, Tampa, FL, USA.
Tammie FerringerDepartment of Pathology, Geisinger Health System, Danville, PA, USA.
David L RimmDepartment of Pathology, Yale School of Medicine, New Haven, CT, USA.
Joel SaltzDepartment of Biomedical Informatics, Stony Brook Medicine, Stony Brook, NY, USA.
Jing Wang *Department of Anesthesiology, Perioperative Care and Pain Medicine, NYU School of Medicine, NYULMC, 435 E 30th St., SB-1008, New York, NY, 10016, USA. Jing.wang2@nyulangone.org.
Rami Vanguri *Department of Pathology, Columbia University Irving Medical Center, PH15-1582, 622 W 168th St., New York, NY, 10032, USA. rv2368@cumc.columbia.edu.
Yvonne M Saenger *Department of Medicine, Columbia University Irving Medical Center, P&S 9-428, 630 W 168th St., New York, NY, 10032, USA. yms4@cumc.columbia.edu.
Columbia University Irving Medical Center · USStony Brook Medicine · USYale University · USIcahn School of Medicine at Mount Sinai · USNew York University · USColumbia University · USGeisinger Health System · USMoffitt Cancer Center · USOregon Health & Science University · USUniversity of Arizona · USUniversity of British Columbia · CAUniversity School · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI DAVID F STERN · 2006 to 2026
$43.9M
A prognostic mRNA immune signature for resected stage II-III melanomaUH2CA218149 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KROLEWSKI, JOHN J., SAENGER, YVONNE MARGARET · 2019 to 2020
$365k
NCATS NIH HHS UL1 TR001863NCI NIH HHS P50 CA121974NCI NIH HHS UH2 CA218149NIH HHS UH2CA218149
6 · The paper itself

Abstract

Accurate prognostic biomarkers in early-stage melanoma are urgently needed to stratify patients for clinical trials of adjuvant therapy. We applied a previously developed open source deep learning algorithm to detect tumor-infiltrating lymphocytes (TILs) in hematoxylin and eosin (H&E) images of early-stage melanomas. We tested whether automated digital (TIL) analysis (ADTA) improved accuracy of prediction of disease specific survival (DSS) based on current pathology standards. ADTA was applied to a training cohort (n = 80) and a cutoff value was defined based on a Receiver Operating Curve. ADTA was then applied to a validation cohort (n = 145) and the previously determined cutoff value was used to stratify high and low risk patients, as demonstrated by Kaplan-Meier analysis (p ≤ 0.001). Multivariable Cox proportional hazards analysis was performed using ADTA, depth, and ulceration as co-variables and showed that ADTA contributed to DSS prediction (HR: 4.18, CI 1.51-11.58, p = 0.006). ADTA provides an effective and attainable assessment of TILs and should be further evaluated in larger studies for inclusion in staging algorithms.

Indexed as

Image Processing, Computer-AssistedAdultAgedAged, 80 and overBiopsyChemotherapy, AdjuvantClinical Decision-MakingDeep LearningFemaleFollow-Up StudiesHumansKaplan-Meier EstimateLymphocytes, Tumor-InfiltratingMaleMelanomaMiddle Aged

Identifiers

PMID33531581
PMCPMC7854647
OpenAlexW3127062960

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.