Evidence map›Paper›PMID 33531029›Full record

ArticleMalaria journal2021

Within-household clustering of genetically related Plasmodium falciparum infections in a moderate transmission area of Uganda.

Jessica Briggs, Alison Kuchta, Max Murphy, Sofonias Tessema, Emmanuel Arinaitwe, John Rek, Anna Chen, Joaniter I Nankabirwa, Chris Drakeley, David Smith and 7 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Sensitive and modular amplicon sequencing ofbioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Article
  8. Measurably recombining malaria parasites.Trends in parasitology · 2023
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 4 countries.

Jessica BriggsDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA. jessica.briggs@ucsf.edu.ORCID http://orcid.org/0000-0002-8078-3898
Alison KuchtaDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Max MurphyDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Sofonias TessemaDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Emmanuel ArinaitweInfectious Diseases Research Collaboration, Kampala, Uganda.
John RekInfectious Diseases Research Collaboration, Kampala, Uganda.
Anna ChenDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Joaniter I NankabirwaInfectious Diseases Research Collaboration, Kampala, Uganda.
Chris DrakeleyDepartment of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, UK.
David SmithInstitute for Health Metrics & Evaluation, University of Washington, Seattle, WA, USA.
Teun BousemaDepartment of Medical Microbiology, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Moses KamyaInfectious Diseases Research Collaboration, Kampala, Uganda.
Isabel Rodriguez-BarraquerDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Sarah StaedkeDepartment of Clinical Research, London School of Hygiene and Tropical Medicine, London, UK.
Grant DorseyDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Philip J RosenthalDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
Bryan GreenhouseDepartment of Medicine, University of California San Francisco, San Francisco, CA, USA.
University of California, San Francisco · USInfectious Diseases Research Collaboration · UGLondon School of Hygiene & Tropical Medicine · GBRadboud University Nijmegen · NLUniversity of Washington · US

Funding

Transmission ProjectU19AI089674 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joaniter Immaculate Nankabirwa · 2010 to 2026
$29.3M
BIOLOGY OF INFECTIOUS DISEASES TRAINING PROGRAMT32AI007641 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MATTHEW G DORSEY · 2000 to 2026
$6.9M
Mentoring translational scientists in international infectious disease researchK24AI144048 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Bryan R Greenhouse · 2019 to 2026
$1.6M
National Institute of Allergy and Infectious Diseases U19AI089674NIAID NIH HHS K24 AI144048NIAID NIH HHS T32 AI007641NIAID NIH HHS U19 AI089674
6 · The paper itself

Abstract

backgroundEvaluation of genetic relatedness of malaria parasites is a useful tool for understanding transmission patterns, but patterns are not easily detectable in areas with moderate to high malaria transmission. To evaluate the feasibility of detecting genetic relatedness in a moderate malaria transmission setting, relatedness of Plasmodium falciparum infections was measured in cohort participants from randomly selected households in the Kihihi sub-county of Uganda (annual entomological inoculation rate of 27 infectious bites per person).

methodsAll infections detected via microscopy or Plasmodium-specific loop mediated isothermal amplification from passive and active case detection during August 2011-March 2012 were genotyped at 26 microsatellite loci, providing data for 349 samples from 230 participants living in 80 households. Pairwise genetic relatedness was calculated using identity by state (IBS).

resultsAs expected, genetic diversity was high (mean heterozygosity [H

conclusionsGenetic data from a relatively small number of diverse, multiallelic loci reflected fine scale patterns of malaria transmission. Given the increasing interest in applying genetic data to augment malaria surveillance, this study provides evidence that genetic data can be used to inform transmission patterns at local spatial scales even in moderate transmission areas.

Indexed as

GenotypeMicrosatellite RepeatsAdultAgedAged, 80 and overChildCohort StudiesHumansIncidenceMalaria, FalciparumMiddle AgedPlasmodium falciparumUgandaYoung AdultClusteringGenotypingMalariaMicrosatelliteMolecular epidemiologyTransmissionUganda

Identifiers

PMID33531029
PMCPMC8042884
OpenAlexW3107409335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.