Evidence map›Paper›PMID 33528643›Full record

ArticleJournal of mathematical biology2021

Global dynamics of the chemostat with overflow metabolism.

Carlos Martínez, Jean-Luc Gouzé

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of mathematical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Carlos MartínezBiocore Team, Université Côte d'Azur, Inria, INRAE, CNRS, Sorbonne Université, Sophia Antipolis, France. carlos.martinez@inria.fr.ORCID 0000-0002-1725-0378
Jean-Luc GouzéBiocore Team, Université Côte d'Azur, Inria, INRAE, CNRS, Sorbonne Université, Sophia Antipolis, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fast growing E. coli cells, in glucose-aerobic conditions, excrete fermentation by-products such as acetate. This phenomenon is known as overflow metabolism and has been observed in a diverse range of microorganisms. In this paper, we study a chemostat model subject to overflow metabolism: if the substrate uptake rate (or the specific growth rate) is above a threshold rate (different from zero), then secretion of a by-product happens. We assume that the presence of the by-product has an inhibitory effect on the growth of the microorganism. The model is described by a non-smooth differential system of dimension three. We prove the existence of at most one equilibrium (or steady-state) with presence of microorganism, which is globally stable. We use these results to discuss the performance of chemostat-type systems to produce biomass or recombinant proteins.

Indexed as

Escherichia coliModels, BiologicalAcetatesBiomassFermentationGlucoseAcetatesGlucoseChemostatCooperative systemGlobal dynamicsGlobal stabilityInhibitorOverflow metabolismRecombinant protein

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.