Evidence map›Paper›PMID 33523915›Full record

ArticleScience advances2021

The chromosomal protein SMCHD1 regulates DNA methylation and the 2c-like state of embryonic stem cells by antagonizing TET proteins.

Zhijun Huang, Jiyoung Yu, Wei Cui, Benjamin K Johnson, Kyunggon Kim, Gerd P Pfeifer

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Zhijun HuangCenter for Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0002-5534-7576
Jiyoung YuCenter for Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0002-3953-200X
Wei CuiCenter for Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.
Benjamin K JohnsonCenter for Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.
Kyunggon KimAsan Medical Center, University of Ulsan, College of Medicine, Songpa, Seoul, South Korea.ORCID 0000-0002-3072-5331
Gerd P PfeiferCenter for Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA. gerd.pfeifer@vai.org.ORCID 0000-0002-5080-9604
Van Andel Institute · USUniversity of Ulsan · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

5-Methylcytosine (5mC) oxidases, the ten-eleven translocation (TET) proteins, initiate DNA demethylation, but it is unclear how 5mC oxidation is regulated. We show that the protein SMCHD1 (structural maintenance of chromosomes flexible hinge domain containing 1) is found in complexes with TET proteins and negatively regulates TET activities. Removal of SMCHD1 from mouse embryonic stem (ES) cells induces DNA hypomethylation, preferentially at SMCHD1 target sites and accumulation of 5-hydroxymethylcytosine (5hmC), along with promoter demethylation and activation of the

Indexed as

DioxygenasesDNA MethylationAnimalsChromosomal Proteins, Non-HistoneChromosomesDNA-Binding ProteinsEmbryonic Stem CellsMiceProto-Oncogene ProteinsChromosomal Proteins, Non-HistoneDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsSmcHD1 protein, mouse

Identifiers

PMID33523915
PMCPMC7817097
OpenAlexW3125462522

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.