Evidence map›Paper›PMID 33523538›Full record

Observational studyTransplant infectious disease : an official journal of the Transplantation Society2021

Rapid molecular detection of airway pathogens in lung transplant recipients.

Jonathan Hoover, Michelle A Mintz, Fred Deiter, Emily Aminian, Joy Chen, Steven R Hays, Jonathan P Singer, Daniel R Calabrese, Jasleen Kukreja, John R Greenland

Abstract readObservational Study
In one paragraph

Observational study in Transplant infectious disease : an official journal of the Transplantation Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Molecular Respiratory Pathogen Panels in Lung Transplantation.Transplant infectious disease : an official journal of the Transplantation Society
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jonathan HooverDepartment of Medicine, University of California, San Francisco, CA, USA.
Michelle A MintzDepartment of Medicine, University of California, San Francisco, CA, USA.
Fred DeiterDepartment of Medicine, University of California, San Francisco, CA, USA.
Emily AminianDepartment of Medicine, University of California, San Francisco, CA, USA.
Joy ChenDepartment of Surgery, University of California, San Francisco, CA, USA.
Steven R HaysDepartment of Medicine, University of California, San Francisco, CA, USA.
Jonathan P SingerDepartment of Medicine, University of California, San Francisco, CA, USA.ORCID https://orcid.org/0000-0003-0224-7472
Daniel R CalabreseDepartment of Medicine, University of California, San Francisco, CA, USA.ORCID https://orcid.org/0000-0002-0596-3434
Jasleen KukrejaDepartment of Surgery, University of California, San Francisco, CA, USA.
John R GreenlandDepartment of Medicine, University of California, San Francisco, CA, USA.ORCID https://orcid.org/0000-0003-1422-8367

Funding

Telomere Dysfunction as a cause of Chronic Lung Allograft DysfunctionR01HL151552 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GREENLAND, JOHN · 2020 to 2024
$1.6M
Cytomegalovirus Immune Responses in Chronic Lung Allograft Dysfunction PathogenesisI01CX002011 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI GREENLAND, JOHN · 2020 to 2025
–
Immune Mechanisms of Large-airway Lymphocytic BronchitisIK2CX001034 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI GREENLAND, JOHN · 2015 to 2019
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BioFire DiagnosticsBLRD VA IK2 BX005301CSRD VA I01 CX002011CSRD VA IK2 CX001034NHLBI NIH HHS HL151552NHLBI NIH HHS R01 HL151552Veterans Affairs Office of Research and Development CX001034Veterans Affairs Office of Research and Development CX002011
6 · The paper itself

Abstract

backgroundAirway infections are difficult to distinguish from acute rejection in lung transplant recipients. Traditional culture techniques take time that may delay treatment. We hypothesized that a rapid multiplex molecular assay could improve time to diagnosis and appropriate clinical decision making.

methodsIn a prospective observational study of recipients undergoing bronchoscopy, we assessed the BioFire

resultsFor the 150 enrolled subjects, BFPP results were available 3.8 hours (IQR 2.8-5.1) following bronchoscopy, compared to 13 hours for viral SOC (IQR 10-34, P < .001) results and 48 hours for bacterial SOC (IQR 46-70, P < .001) results. Positive BFPP results were interpreted in 9 hours (IQR 5-20) following bronchoscopy, compared to 74 hours for SOC (IQR 37-110, P < .001). Assays agreed for 138 (92%) of the 150 subjects. Of 22 BFPP diagnoses, five (23%) resulted in a shadow antibiotic recommendation. Notable BFPP deficiencies included fungal species and H parainfluenzae, accounting for 15 (27%) and 13 (23%) of the 56 actionable SOC results, respectively.

conclusionsThis molecular diagnostic including bacterial targets has the potential to shorten time to diagnosis and augment current clinical decision making but cannot replace SOC culture methods.

Indexed as

PneumoniaTransplant RecipientsBacteriaFungiHumansLungbacterial infectionBioFirelung transplantmolecular diagnosticspneumoniatracheobronchitis

Identifiers

PMID33523538
PMCPMC8325716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.