Evidence map›Paper›PMID 33519772›Full record

ArticleFrontiers in microbiology2020

Decrease of Clone Diversity in IgM Repertoires of HBV Chronically Infected Individuals With High Level of Viral Replication.

Binbin Hong, Lizhi Wang, Chunlan Huang, Xiaoju Hong, Alan Liu, Qiulan Li, Qiaoling Liu, Lili Su, Lixing Wang, Chunyu Wang and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Binbin HongCentral Laboratory, Second Affiliated Hospital, Fujian Medical University, Quanzhou, China.
Lizhi WangTraditional Chinese Medicine Department, Rehabilitation Hospital, Quanzhou, China.
Chunlan HuangTraditional Chinese Medicine Department, Rehabilitation Hospital, Quanzhou, China.
Xiaoju HongTraditional Chinese Medicine Department, Rehabilitation Hospital, Quanzhou, China.
Alan LiuTraditional Chinese Medicine Department, Rehabilitation Hospital, Quanzhou, China.
Qiulan LiCentral Laboratory, Second Affiliated Hospital, Fujian Medical University, Quanzhou, China.
Qiaoling LiuCentral Laboratory, Second Affiliated Hospital, Fujian Medical University, Quanzhou, China.
Lili SuCentral Laboratory, Second Affiliated Hospital, Fujian Medical University, Quanzhou, China.
Lixing WangCentral Laboratory, Second Affiliated Hospital, Fujian Medical University, Quanzhou, China.
Chunyu WangKey Laboratory of Medical Molecular Virology of Ministries of Education and Health, School of Basic Medical Sciences, Fudan University, Shanghai, China.
Tianlei YingKey Laboratory of Medical Molecular Virology of Ministries of Education and Health, School of Basic Medical Sciences, Fudan University, Shanghai, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-throughput antibody sequencing allows in-depth insights into human antibody repertoires. To investigate the characteristics of antibody repertoires in patients with chronic HBV infection, we performed Illumina sequencing and IMGT/HighV-QUEST analysis of B lymphocytes from healthy adults and the HBV carriers with high or low level of viral replication. The comparative study revealed high levels of similarity between the IgM and IgG repertoires of the HBV carriers and the healthy adults, including the somatic mutations in V regions, the average CDR3 length, and the occurrence of junctional modifications. Nevertheless, the diversity of the unique clones decreased and some clusters of unique clones expanded in the IgM repertoire of chronic HBV carriers (CHB) compared with healthy adults (HH) and inactive HBV carriers (IHB). Such difference in clone diversity and expansion was not observed in the IgG repertoires of the three populations. More shared antibody clones were found between the IgM repertoires of IHB and HH than that found between CHB and HH (7079 clones vs. 2304 clones). Besides, the biased used IGHD genes were IGHD2-2 and IGHD3-3 in CHB library but were IGHD3-10 and IGHD3-22 in IHB and HH library. In contrast, for IgG repertories, the preferred used VDJ genes were similar in all the three populations. These results indicated that low level of serum HBV might not induce significant changes in BCR repertoires, and high level of HBV replication could have more impacts on IgM repertories than IgG repertoires. Taken together, our findings provide a better understanding of the antibody repertoires of HBV chronically infected individuals.

Indexed as

antibody repertoirechronic HBV infectionclone diversityhigh-throughput sequencingimmunoglobulin M

Identifiers

PMID33519772
PMCPMC7843509

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