Evidence map›Paper›PMID 33515490›Full record

ArticleCell systems2021

Quantitative measurements of early alphaviral replication dynamics in single cells reveals the basis for superinfection exclusion.

Zakary S Singer, Pradeep M Ambrose, Tal Danino, Charles M Rice

Abstract read
In one paragraph

Article in Cell systems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Systems Virology at Scale.Current opinion in systems biology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Safety concern of recombination between self-amplifying mRNA vaccines and viruses is mitigated in vivo.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  9. Article
  10. Article
  11. Mimicking superinfection exclusion disrupts alphavirus infection and transmission in the yellow fever mosquitoProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Unveil the Secret of the Bacteria and Phage Arms Race.International journal of molecular sciences · 2023
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Zakary S SingerDepartment of Biomedical Engineering, Columbia University, New York, NY 10027, USA; Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Pradeep M AmbroseLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA; Department of Physiology, Biophysics, and Systems Biology, Weill Cornell Medicine, New York, NY 10065, USA.
Tal DaninoDepartment of Biomedical Engineering, Columbia University, New York, NY 10027, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10027, USA; Data Science Institute, Columbia University, New York, NY 10027, USA. Electronic address: td2506@columbia.edu.
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA. Electronic address: ricec@rockefeller.edu.

Funding

Engineering of bacterial probiotics for the detection and treatment of hepatocellular carcinomaF32CA225145 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI SINGER, ZAKARY · 2018 to 2020
$191k
NCI NIH HHS F32 CA225145
6 · The paper itself

Abstract

While decades of research have elucidated many steps of the alphavirus lifecycle, the earliest replication dynamics have remained unclear. This missing time window has obscured early replicase strand-synthesis behavior and prevented elucidation of how the first events of infection might influence subsequent viral competition. Using quantitative live-cell and single-molecule imaging, we observed the initial replicase activity and its strand preferences in situ and measured the trajectory of replication over time. Under this quantitative framework, we investigated viral competition, where one alphavirus is able to exclude superinfection by a second homologous virus. We show that this appears as an indirect phenotypic consequence of a bidirectional competition between the two species, coupled with the rapid onset of viral replication and a limited total cellular carrying capacity. Together, these results emphasize the utility of analyzing viral kinetics within single cells.

Indexed as

AlphavirusEvaluation Studies as TopicHumansSingle-Cell AnalysisSuperinfectionalphavirusreplication dynamicsRNA virussingle-cellsingle-moleculesmFISHsuperinfection exclusiontime lapse

Identifiers

PMID33515490
PMCPMC9143976

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.