Evidence map›Paper›PMID 33515460›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2021

Spontaneous Emergence of Azithromycin Resistance in Independent Lineages of Salmonella Typhi in Northern India.

Megan E Carey, Ruby Jain, Mohammad Yousuf, Mailis Maes, Zoe A Dyson, Trang Nguyen Hoang Thu, To Nguyen Thi Nguyen, Thanh Ho Ngoc Dan, Quynh Nhu Pham Nguyen, Jaspreet Mahindroo and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 2 pooled it
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 2 syntheses or guidelines pooled it, 67 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Azithromycin-resistantJAC-antimicrobial resistance · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. ConfrontingInfection and drug resistance · 2026
    Review
  11. Article
  12. Azithromycin resistance inJAC-antimicrobial resistance · 2025
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Emergence of carbapenem-resistantFrontiers in microbiology · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 4 countries.

Megan E CareyCambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
Ruby JainCivil Hospital, Manimajra, Chandigarh, India.
Mohammad YousufDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India.
Mailis MaesCambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
Zoe A DysonCambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
Trang Nguyen Hoang ThuThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
To Nguyen Thi NguyenThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Thanh Ho Ngoc DanThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Quynh Nhu Pham NguyenThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Jaspreet MahindrooDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India.
Duy Thanh PhamThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Kawaljeet Singh SandhaCivil Hospital, Manimajra, Chandigarh, India.
Stephen BakerCambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
Neelam TanejaDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India.
Oxford University Clinical Research Unit · VNUniversity of Cambridge · GBPost Graduate Institute of Medical Education and Research · INUniversity of Oxford · GB

Funding

Department of HealthWellcome TrustWellcome Trust 215515/Z/19/Z
6 · The paper itself

Abstract

backgroundThe emergence and spread of antimicrobial resistance (AMR) pose a major threat to the effective treatment and control of typhoid fever. The ongoing outbreak of extensively drug-resistant Salmonella Typhi (S. Typhi) in Pakistan has left azithromycin as the only remaining broadly efficacious oral antimicrobial for typhoid in South Asia. Ominously, azithromycin-resistant S. Typhi organisms have been subsequently reported in Bangladesh, Pakistan, and Nepal.

methodsHere, we aimed to understand the molecular basis of AMR in 66 S. Typhi organisms isolated in a cross-sectional study performed in a suburb of Chandigarh in Northern India using whole-genome sequencing and phylogenetic analysis.

resultsWe identified 7 S. Typhi organisms with the R717Q mutation in the acrB gene that was recently found to confer resistance to azithromycin in Bangladesh. Six out of the seven azithromycin-resistant S. Typhi isolates also exhibited triple mutations in gyrA (S83F and D87N) and parC (S80I) genes and were resistant to ciprofloxacin. These contemporary ciprofloxacin/azithromycin-resistant isolates were phylogenetically distinct from each other and from those reported from Bangladesh, Pakistan, and Nepal.

conclusionsThe independent emergence of azithromycin-resistant typhoid in Northern India reflects an emerging broader problem across South Asia and illustrates the urgent need for the introduction of typhoid conjugate vaccines in the region.

Indexed as

Salmonella typhiTyphoid FeverAnti-Bacterial AgentsAzithromycinBangladeshCross-Sectional StudiesDrug Resistance, BacterialGenotypeHumansIndiaMicrobial Sensitivity TestsNepalPakistanPhylogenyAnti-Bacterial AgentsAzithromycinantimicrobial resistanceazithromycin resistanceIndiaSalmonella Typhityphoid fever

Identifiers

PMID33515460
PMCPMC7935384
OpenAlexW3127454425

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.